Variant report

Variant	rs11242626
Chromosome Location	chr5:106440579-106440580
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:106438990..106441364-chr5:107007772..107009984,2	MCF-7	breast:
2	chr5:106440457..106441006-chr5:107009040..107009721,2	MCF-7	breast:
3	chr5:106440118..106440828-chr5:106583731..106584326,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10060196	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10479394	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10900898	0.80[ASN][1000 genomes]
rs11242625	0.82[ASN][1000 genomes]
rs11749835	0.83[ASN][1000 genomes]
rs11949192	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960038	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12522490	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12522515	0.92[ASN][1000 genomes]
rs12658379	0.82[ASN][1000 genomes]
rs1345636	0.81[ASN][1000 genomes]
rs1345637	0.87[ASN][1000 genomes]
rs1549175	0.86[ASN][1000 genomes]
rs17384663	0.82[ASN][1000 genomes]
rs2410933	0.85[ASN][1000 genomes]
rs2410935	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2410938	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2410939	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2410940	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2410941	0.89[ASN][1000 genomes]
rs2410943	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2410945	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2410946	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2410947	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2410948	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2410949	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2410951	0.80[ASN][1000 genomes]
rs2410952	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2898604	0.83[ASN][1000 genomes]
rs4245993	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4429838	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4524495	0.90[ASN][1000 genomes]
rs4535439	0.89[ASN][1000 genomes]
rs4557390	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4631165	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4637535	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4957530	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4957685	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4957687	0.83[ASN][1000 genomes]
rs4957688	0.80[ASN][1000 genomes]
rs4957690	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55689542	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58196349	0.91[ASN][1000 genomes]
rs6596717	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6596719	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6596720	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6596721	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6596722	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6864971	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6866458	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6870023	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6871050	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6871532	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6878038	0.83[ASN][1000 genomes]
rs6884885	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6885021	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6887291	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6892104	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6895080	0.80[ASN][1000 genomes]
rs7706390	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7710297	0.92[ASN][1000 genomes]
rs7733658	0.92[ASN][1000 genomes]
rs7736860	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106439200-106444000	Weak transcription	Aorta	Aorta
2	chr5:106440000-106440600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr5:106440200-106440600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:106440200-106440600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:106440200-106440600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:106440200-106440600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:106440200-106440600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:106440200-106440600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:106440200-106440600	Enhancers	Fetal Muscle Leg	muscle
10	chr5:106440200-106440600	Enhancers	Ovary	ovary
11	chr5:106440200-106440600	Enhancers	Pancreas	Pancrea
12	chr5:106440200-106440600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:106440200-106440600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr5:106440200-106440800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr5:106440200-106440800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:106440200-106440800	Enhancers	Fetal Kidney	kidney
17	chr5:106440200-106440800	Enhancers	A549	lung
18	chr5:106440200-106441000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr5:106440200-106441000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:106440200-106444800	Weak transcription	Psoas Muscle	Psoas

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