Variant report

Variant	rs12658379
Chromosome Location	chr5:106428845-106428846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106389025..106391862-chr5:106427124..106429120,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10043242	0.87[ASN][1000 genomes]
rs1030172	0.87[ASN][1000 genomes]
rs1030173	0.87[ASN][1000 genomes]
rs1030174	0.87[ASN][1000 genomes]
rs10479394	0.82[ASN][1000 genomes]
rs10515368	0.89[ASN][1000 genomes]
rs10900898	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11242625	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11242626	0.82[ASN][1000 genomes]
rs11242627	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11749835	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11949192	0.82[ASN][1000 genomes]
rs11960038	0.82[ASN][1000 genomes]
rs1345636	0.82[ASN][1000 genomes]
rs17384663	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17386596	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.85[ASN][1000 genomes]
rs1833606	0.88[ASN][1000 genomes]
rs1990908	0.89[ASN][1000 genomes]
rs2161234	0.85[ASN][1000 genomes]
rs2410933	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2410935	0.82[ASN][1000 genomes]
rs2410938	0.82[ASN][1000 genomes]
rs2410939	0.80[ASN][1000 genomes]
rs2410941	0.82[ASN][1000 genomes]
rs2410942	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2410944	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2410951	0.89[ASN][1000 genomes]
rs2898604	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4429838	0.82[ASN][1000 genomes]
rs4524495	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4535439	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4557390	0.82[ASN][1000 genomes]
rs4957530	0.85[ASN][1000 genomes]
rs4957531	0.88[ASN][1000 genomes]
rs4957685	0.82[ASN][1000 genomes]
rs4957687	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4957688	0.89[ASN][1000 genomes]
rs58196349	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6596717	0.85[ASN][1000 genomes]
rs6596722	0.86[CHB][hapmap]
rs6862257	0.88[ASN][1000 genomes]
rs6862498	0.90[ASN][1000 genomes]
rs6864971	0.82[ASN][1000 genomes]
rs6865431	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6866458	0.82[ASN][1000 genomes]
rs6870023	0.83[ASN][1000 genomes]
rs6878038	0.86[ASN][1000 genomes]
rs6884885	0.84[ASN][1000 genomes]
rs6885021	0.85[ASN][1000 genomes]
rs6887291	0.82[ASN][1000 genomes]
rs6895080	0.89[ASN][1000 genomes]
rs7710595	0.89[ASN][1000 genomes]
rs7716820	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106423800-106430000	Weak transcription	Aorta	Aorta

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