Variant report

Variant	rs11242625
Chromosome Location	chr5:106395977-106395978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10043242	0.83[ASN][1000 genomes]
rs1030172	0.83[ASN][1000 genomes]
rs1030173	0.83[ASN][1000 genomes]
rs1030174	0.83[ASN][1000 genomes]
rs10479394	0.88[ASN][1000 genomes]
rs10515368	0.85[ASN][1000 genomes]
rs10900898	0.87[ASN][1000 genomes]
rs11242626	0.82[ASN][1000 genomes]
rs11242627	0.86[ASN][1000 genomes]
rs11749835	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11949192	0.82[ASN][1000 genomes]
rs11960038	0.81[ASN][1000 genomes]
rs12658379	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17384663	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17386596	0.81[ASN][1000 genomes]
rs1833606	0.84[ASN][1000 genomes]
rs1990908	0.85[ASN][1000 genomes]
rs2161234	0.81[ASN][1000 genomes]
rs2410933	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2410935	0.82[ASN][1000 genomes]
rs2410938	0.81[ASN][1000 genomes]
rs2410942	0.86[ASN][1000 genomes]
rs2410944	0.86[ASN][1000 genomes]
rs2410951	0.87[ASN][1000 genomes]
rs2898604	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4429838	0.88[ASN][1000 genomes]
rs4524495	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4535439	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4557390	0.88[ASN][1000 genomes]
rs4957530	0.84[ASN][1000 genomes]
rs4957531	0.84[ASN][1000 genomes]
rs4957685	0.88[ASN][1000 genomes]
rs4957687	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4957688	0.87[ASN][1000 genomes]
rs58196349	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6596717	0.84[ASN][1000 genomes]
rs6862257	0.84[ASN][1000 genomes]
rs6862498	0.86[ASN][1000 genomes]
rs6864971	0.88[ASN][1000 genomes]
rs6865431	0.86[ASN][1000 genomes]
rs6866458	0.81[ASN][1000 genomes]
rs6870023	0.87[ASN][1000 genomes]
rs6878038	0.85[ASN][1000 genomes]
rs6884885	0.83[ASN][1000 genomes]
rs6885021	0.84[ASN][1000 genomes]
rs6887291	0.81[ASN][1000 genomes]
rs6895080	0.87[ASN][1000 genomes]
rs7710595	0.85[ASN][1000 genomes]
rs7716820	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv882679	chr5:106263197-106399718	Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106394600-106398800	Weak transcription	NHEK	skin
2	chr5:106394800-106398600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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