Variant report

Variant	rs11749835
Chromosome Location	chr5:106435555-106435556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10043242	0.88[ASN][1000 genomes]
rs1030172	0.88[ASN][1000 genomes]
rs1030173	0.88[ASN][1000 genomes]
rs1030174	0.88[ASN][1000 genomes]
rs10515368	0.85[ASN][1000 genomes]
rs10900898	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11242625	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11242626	0.83[ASN][1000 genomes]
rs11242627	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11949192	0.83[ASN][1000 genomes]
rs11960038	0.84[ASN][1000 genomes]
rs12658379	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17384663	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17386596	0.81[ASN][1000 genomes]
rs1833606	0.89[ASN][1000 genomes]
rs1990908	0.84[ASN][1000 genomes]
rs2161234	0.81[ASN][1000 genomes]
rs2410933	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2410935	0.83[ASN][1000 genomes]
rs2410938	0.84[ASN][1000 genomes]
rs2410939	0.81[ASN][1000 genomes]
rs2410941	0.84[ASN][1000 genomes]
rs2410942	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2410944	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2410951	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2898604	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4524495	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4535439	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4957530	0.81[ASN][1000 genomes]
rs4957531	0.89[ASN][1000 genomes]
rs4957687	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957688	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58196349	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6596717	0.81[ASN][1000 genomes]
rs6862257	0.89[ASN][1000 genomes]
rs6862498	0.85[ASN][1000 genomes]
rs6865431	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6866458	0.84[ASN][1000 genomes]
rs6878038	0.84[ASN][1000 genomes]
rs6885021	0.81[ASN][1000 genomes]
rs6887291	0.84[ASN][1000 genomes]
rs6895080	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7710595	0.84[ASN][1000 genomes]
rs7716820	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106430600-106438800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:106430600-106438800	Weak transcription	Aorta	Aorta
3	chr5:106435000-106440200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:106435000-106440200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:106435000-106440200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:106435000-106440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:106435400-106440200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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