Variant report

Variant	rs1549533
Chromosome Location	chr4:119828385-119828386
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:119822286..119824016-chr4:119827760..119829668,2	K562	blood:
2	chr4:119821350..119824825-chr4:119825074..119829260,4	K562	blood:
3	chr4:119786405..119788908-chr4:119826378..119828517,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10002822	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11726903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507203	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648221	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13138512	0.88[CHB][hapmap]
rs2114462	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2172013	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4611911	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4834723	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs736965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754397	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs875229	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs955606	0.85[ASN][1000 genomes]
rs957776	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119817000-119830000	Weak transcription	Right Ventricle	heart
2	chr4:119826200-119830400	Weak transcription	Fetal Lung	lung
3	chr4:119826600-119830400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:119826800-119839600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:119827000-119830200	Weak transcription	Left Ventricle	heart
6	chr4:119827000-119830200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:119827000-119830200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:119827000-119830400	Weak transcription	Ovary	ovary
9	chr4:119827000-119830400	Weak transcription	Psoas Muscle	Psoas
10	chr4:119827000-119830600	Weak transcription	Aorta	Aorta
11	chr4:119827000-119831000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:119827000-119832600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:119827200-119829600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:119827200-119829800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:119827200-119830200	Weak transcription	Fetal Heart	heart
16	chr4:119827200-119830400	Weak transcription	Fetal Stomach	stomach
17	chr4:119827200-119830400	Weak transcription	Right Atrium	heart
18	chr4:119827200-119830600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:119827200-119831600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:119827200-119832000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:119827200-119832400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:119827200-119832400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:119827200-119832400	Weak transcription	NH-A	brain
24	chr4:119827200-119832400	Weak transcription	Osteobl	bone
25	chr4:119827400-119830200	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:119827400-119832000	Weak transcription	NHDF-Ad	bronchial
27	chr4:119827600-119830400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:119827600-119831800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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