Variant report

Variant	rs4834723
Chromosome Location	chr4:119854066-119854067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10002822	0.84[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs12648221	0.91[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13138512	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1549533	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs2172013	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4611911	0.88[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs736965	0.84[CEU][hapmap];0.88[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap]
rs754397	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs875229	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs955606	0.81[ASN][1000 genomes]
rs957776	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4834723	C4orf31	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119841000-119858400	Weak transcription	Psoas Muscle	Psoas
2	chr4:119842600-119861800	Weak transcription	Right Ventricle	heart
3	chr4:119847400-119861800	Weak transcription	Left Ventricle	heart
4	chr4:119848400-119860200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:119848400-119861800	Weak transcription	Right Atrium	heart
6	chr4:119849400-119857200	Weak transcription	Fetal Stomach	stomach
7	chr4:119849400-119858000	Weak transcription	Aorta	Aorta
8	chr4:119849800-119857200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:119850400-119858400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:119851200-119860400	Weak transcription	Fetal Intestine Small	intestine
11	chr4:119852200-119857000	Weak transcription	Ovary	ovary
12	chr4:119852800-119856000	Enhancers	Stomach Smooth Muscle	stomach
13	chr4:119852800-119857000	Enhancers	Rectal Smooth Muscle	rectum
14	chr4:119853600-119854200	Enhancers	Colon Smooth Muscle	Colon
15	chr4:119853800-119854600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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