Variant report

Variant	rs1550355
Chromosome Location	chr5:124477601-124477602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10061454	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071085	1.00[AMR][1000 genomes]
rs10076095	1.00[AMR][1000 genomes]
rs1030951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12188573	1.00[AMR][1000 genomes]
rs13167433	1.00[AMR][1000 genomes]
rs13182079	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1371375	1.00[AMR][1000 genomes]
rs1371376	1.00[AMR][1000 genomes]
rs1371377	1.00[AMR][1000 genomes]
rs1439597	1.00[AMR][1000 genomes]
rs1550366	1.00[AMR][1000 genomes]
rs1550367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1550368	0.84[AFR][1000 genomes]
rs1550369	0.84[AFR][1000 genomes]
rs2053357	0.84[AFR][1000 genomes]
rs4429850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4836150	1.00[AMR][1000 genomes]
rs4836152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4836154	1.00[AMR][1000 genomes]
rs6595579	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878640	1.00[AMR][1000 genomes]
rs6889068	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7449435	1.00[AMR][1000 genomes]
rs7720265	1.00[AMR][1000 genomes]
rs9327352	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv823205	chr5:124477336-124477983	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124471000-124478400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124471400-124484600	Weak transcription	HSMM	muscle
3	chr5:124476000-124478800	Enhancers	NHDF-Ad	bronchial
4	chr5:124477000-124479200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:124477200-124488200	Weak transcription	HUVEC	blood vessel
6	chr5:124477400-124478400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:124477400-124484600	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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