Variant report

Variant	rs1550369
Chromosome Location	chr5:124489746-124489747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10044704	1.00[AMR][1000 genomes]
rs1030951	0.84[AFR][1000 genomes]
rs13182079	0.83[AFR][1000 genomes]
rs1550355	0.84[AFR][1000 genomes]
rs1550367	0.84[AFR][1000 genomes]
rs1550368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2053357	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4429850	0.84[AFR][1000 genomes]
rs4836152	0.84[AFR][1000 genomes]
rs6595579	0.89[AFR][1000 genomes]
rs7725529	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124484000-124490800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:124485000-124490000	Enhancers	Fetal Lung	lung
3	chr5:124485200-124490000	Weak transcription	HSMM	muscle
4	chr5:124485600-124489800	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:124486000-124489800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:124486000-124490600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:124486400-124490000	Weak transcription	Fetal Stomach	stomach
8	chr5:124486600-124490600	Enhancers	Adipose Nuclei	Adipose
9	chr5:124486800-124490000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:124486800-124490000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:124486800-124491000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:124487800-124490600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:124488000-124491600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:124488600-124490200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:124488600-124490200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:124488600-124492800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:124488600-124493200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:124488800-124492200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:124488800-124493000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:124488800-124493000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:124488800-124496200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:124489400-124489800	Weak transcription	HSMMtube	muscle
23	chr5:124489600-124490600	Weak transcription	Fetal Kidney	kidney
24	chr5:124489600-124491000	Enhancers	NHDF-Ad	bronchial
25	chr5:124489600-124492800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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