Variant report

Variant	rs15504
Chromosome Location	chr7:16831537-16831538
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16829970..16831887-chr7:16844780..16846882,2	K562	blood:
2	chr7:16831486..16833209-chr7:16838972..16841146,2	K562	blood:
3	chr14:57046088..57048025-chr7:16829730..16832463,2	MCF-7	breast:
4	chr7:16806775..16809760-chr7:16831007..16833203,2	K562	blood:
5	chr7:16829911..16832805-chr7:16833008..16837157,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106541	Chromatin interaction
ENSG00000070269	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28626646	0.94[EUR][1000 genomes]
rs58602292	0.91[EUR][1000 genomes]
rs7785009	0.97[EUR][1000 genomes]
rs7809828	0.88[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16805000-16832400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr7:16811400-16833600	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:16814000-16834600	Weak transcription	Fetal Brain Male	brain
4	chr7:16814400-16843800	Weak transcription	Small Intestine	intestine
5	chr7:16815000-16838000	Weak transcription	K562	blood
6	chr7:16816800-16835000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:16819800-16838000	Weak transcription	Placenta	Placenta
8	chr7:16820200-16835400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:16823600-16835400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:16823600-16843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:16825800-16831800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:16825800-16832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:16825800-16833600	Weak transcription	Gastric	stomach
14	chr7:16825800-16834400	Weak transcription	Fetal Brain Female	brain
15	chr7:16825800-16834600	Weak transcription	Fetal Stomach	stomach
16	chr7:16825800-16836600	Weak transcription	Left Ventricle	heart
17	chr7:16827400-16837000	Weak transcription	Primary B cells from cord blood	blood
18	chr7:16827600-16832200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:16827600-16835400	Weak transcription	Stomach Mucosa	stomach
20	chr7:16827800-16832000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:16828000-16834400	Weak transcription	Fetal Intestine Small	intestine
22	chr7:16830600-16831800	Enhancers	NHEK	skin
23	chr7:16830800-16832000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:16830800-16834400	Weak transcription	HSMMtube	muscle
25	chr7:16831400-16831800	Enhancers	Hela-S3	cervix
26	chr7:16831400-16832000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr7:16831400-16832000	Genic enhancers	Fetal Intestine Large	intestine
28	chr7:16831400-16832200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr7:16831400-16832200	Enhancers	NHDF-Ad	bronchial
30	chr7:16831400-16833600	Weak transcription	A549	lung

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