Variant report

Variant	rs28626646
Chromosome Location	chr7:16835351-16835352
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16834118..16835745-chr7:16839306..16840832,2	MCF-7	breast:
2	chr7:16829911..16832805-chr7:16833008..16837157,5	MCF-7	breast:
3	chr7:16832562..16837080-chr7:16918023..16922699,4	MCF-7	breast:
4	chr7:16816860..16820045-chr7:16832794..16835975,4	MCF-7	breast:
5	chr7:16687122..16688978-chr7:16834691..16836513,2	MCF-7	breast:
6	chr7:16834464..16837381-chr7:16917250..16920233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173467	Chromatin interaction
ENSG00000106541	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10277726	0.85[AFR][1000 genomes]
rs15504	0.94[EUR][1000 genomes]
rs58602292	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7785009	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7809828	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv887761	chr7:16834361-17732490	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv887762	chr7:16834361-17746628	Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv887763	chr7:16834361-17750811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16814400-16843800	Weak transcription	Small Intestine	intestine
2	chr7:16815000-16838000	Weak transcription	K562	blood
3	chr7:16819800-16838000	Weak transcription	Placenta	Placenta
4	chr7:16820200-16835400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:16823600-16835400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:16823600-16843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:16825800-16836600	Weak transcription	Left Ventricle	heart
8	chr7:16827400-16837000	Weak transcription	Primary B cells from cord blood	blood
9	chr7:16827600-16835400	Weak transcription	Stomach Mucosa	stomach
10	chr7:16831800-16839200	Strong transcription	Placenta Amnion	Placenta Amnion
11	chr7:16832000-16835600	Strong transcription	Fetal Intestine Large	intestine
12	chr7:16832000-16839600	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr7:16832400-16838200	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:16832400-16840000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr7:16833600-16839600	Strong transcription	A549	lung
16	chr7:16833800-16835400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:16834000-16842400	Weak transcription	Gastric	stomach
18	chr7:16834200-16839800	Strong transcription	Duodenum Mucosa	Duodenum
19	chr7:16834400-16835600	Enhancers	Fetal Heart	heart
20	chr7:16834400-16837800	Strong transcription	Fetal Intestine Small	intestine
21	chr7:16834600-16835800	Enhancers	Fetal Stomach	stomach
22	chr7:16834600-16836200	Enhancers	Fetal Brain Male	brain
23	chr7:16834800-16837200	Weak transcription	Colonic Mucosa	Colon
24	chr7:16835000-16835400	Weak transcription	Fetal Brain Female	brain
25	chr7:16835000-16835600	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:16835000-16844200	Weak transcription	Psoas Muscle	Psoas
27	chr7:16835200-16835600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr7:16835200-16835800	Enhancers	Brain Germinal Matrix	brain
29	chr7:16835200-16836000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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