Variant report

Variant	rs1550743
Chromosome Location	chr3:133411922-133411923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1373551	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2718804	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2718817	0.80[ASN][1000 genomes]
rs2887747	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4241354	0.80[ASN][1000 genomes]
rs4854588	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4854739	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4854759	1.00[JPT][hapmap]
rs6767770	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7623155	0.80[ASN][1000 genomes]
rs8177201	1.00[JPT][hapmap]
rs8177220	1.00[JPT][hapmap]
rs9863253	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9880615	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516081	chr3:133399702-133412094	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
2	nsv979783	chr3:133408825-133413260	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133410800-133412000	Weak transcription	HepG2	liver
2	chr3:133411800-133430800	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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