Variant report

Variant	rs9863253
Chromosome Location	chr3:133384936-133384937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133382700..133384294-chr3:133384936..133386823,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252641	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1373551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382700	1.00[CHB][hapmap]
rs1550743	0.80[ASN][1000 genomes]
rs2718804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718817	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2887747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241354	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854759	1.00[JPT][hapmap]
rs6765260	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6767770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792846	1.00[CHB][hapmap]
rs7623155	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177201	1.00[JPT][hapmap]
rs8177220	1.00[JPT][hapmap]
rs9847556	0.89[CEU][hapmap]
rs9880615	1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9863253	CDV3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133381400-133392400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:133381600-133386200	Weak transcription	Fetal Stomach	stomach
3	chr3:133381600-133387200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:133381600-133387200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:133381600-133387400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:133381600-133387400	Weak transcription	Fetal Heart	heart
7	chr3:133381600-133388800	Weak transcription	Gastric	stomach
8	chr3:133382000-133387600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:133382000-133387600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:133382600-133387600	Weak transcription	NH-A	brain
11	chr3:133382800-133385600	Weak transcription	Primary T cells from cord blood	blood
12	chr3:133382800-133386200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:133382800-133386400	Weak transcription	Fetal Thymus	thymus
14	chr3:133382800-133386600	Weak transcription	Pancreas	Pancrea
15	chr3:133382800-133387200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:133382800-133387200	Weak transcription	Placenta	Placenta
17	chr3:133382800-133387200	Weak transcription	Right Atrium	heart
18	chr3:133382800-133387400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:133382800-133387400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:133382800-133387400	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:133382800-133387600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:133382800-133387600	Weak transcription	Fetal Intestine Large	intestine
23	chr3:133382800-133388400	Enhancers	HepG2	liver
24	chr3:133382800-133390200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:133382800-133392800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:133383000-133386800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:133383000-133387400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:133383000-133389000	Weak transcription	Fetal Intestine Small	intestine
29	chr3:133383000-133389000	Weak transcription	A549	lung
30	chr3:133383200-133387400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:133383600-133386400	Weak transcription	Liver	Liver
32	chr3:133384000-133386000	Weak transcription	K562	blood

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