Variant report

Variant	rs1551445
Chromosome Location	chr15:59128558-59128559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59116572..59119429-chr15:59127438..59129580,2	K562	blood:
2	chr15:59124465..59128626-chr15:59131902..59134860,3	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11071393	0.82[CEU][hapmap]
rs11071397	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12437928	0.90[JPT][hapmap]
rs12437952	0.83[EUR][1000 genomes]
rs12439231	0.88[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs12439632	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12441313	0.88[CEU][hapmap];0.89[CHB][hapmap]
rs12441912	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs12591310	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12592332	0.82[CEU][hapmap];0.86[GIH][hapmap]
rs12595057	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12905110	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs12906705	0.82[CEU][hapmap];0.84[GIH][hapmap]
rs12908261	0.88[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs12912286	0.82[CEU][hapmap];0.86[GIH][hapmap]
rs12913383	0.94[CEU][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs12914164	0.86[JPT][hapmap]
rs12915713	0.93[ASN][1000 genomes]
rs12917083	0.83[EUR][1000 genomes]
rs1426652	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs16940651	0.84[GIH][hapmap]
rs17236194	0.88[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs2013098	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2052805	0.82[CEU][hapmap];0.86[GIH][hapmap]
rs28394222	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28412567	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28455654	0.86[GIH][hapmap]
rs28470867	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28510910	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28701980	0.85[ASN][1000 genomes]
rs28733370	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28793354	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28800895	0.93[ASN][1000 genomes]
rs28876251	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28889637	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs347112	0.90[JPT][hapmap]
rs4775095	0.90[JPT][hapmap]
rs481309	0.90[JPT][hapmap]
rs500057	0.90[JPT][hapmap]
rs501165	0.85[JPT][hapmap]
rs510759	0.90[JPT][hapmap]
rs556256	0.90[JPT][hapmap]
rs574683	0.90[JPT][hapmap]
rs597112	0.90[JPT][hapmap]
rs601795	0.90[JPT][hapmap]
rs62002455	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62002456	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6494030	0.84[GIH][hapmap]
rs6494031	0.82[CEU][hapmap];0.86[GIH][hapmap]
rs6494034	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap]
rs6494038	0.82[CEU][hapmap];0.86[GIH][hapmap]
rs652193	0.90[JPT][hapmap]
rs664936	0.85[JPT][hapmap]
rs684505	0.90[JPT][hapmap]
rs688343	0.90[JPT][hapmap]
rs7165019	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7165402	0.84[GIH][hapmap]
rs7167528	0.82[CEU][hapmap]
rs7168825	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7169205	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7169796	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7171482	0.91[EUR][1000 genomes]
rs7174386	0.84[GIH][hapmap];0.81[TSI][hapmap]
rs8025383	0.85[ASN][1000 genomes]
rs8029301	0.89[ASW][hapmap];0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.94[ASN][1000 genomes]
rs8029805	0.88[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs8033691	0.88[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1551445	ONECUT1	cis	cerebellum	SCAN

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59064600-59145600	Weak transcription	Gastric	stomach
2	chr15:59065800-59142800	Weak transcription	Aorta	Aorta
3	chr15:59067000-59157800	Weak transcription	Hela-S3	cervix
4	chr15:59075000-59139800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:59077800-59153600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:59090200-59156600	Weak transcription	Small Intestine	intestine
7	chr15:59095200-59156800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:59100400-59139800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:59103200-59135200	Weak transcription	Pancreas	Pancrea
10	chr15:59103600-59148800	Weak transcription	A549	lung
11	chr15:59103800-59133000	Weak transcription	Spleen	Spleen
12	chr15:59103800-59157000	Weak transcription	Psoas Muscle	Psoas
13	chr15:59104000-59137600	Weak transcription	Liver	Liver
14	chr15:59104000-59139800	Weak transcription	Fetal Lung	lung
15	chr15:59104000-59146600	Weak transcription	NH-A	brain
16	chr15:59104000-59148400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:59104000-59157000	Weak transcription	Esophagus	oesophagus
18	chr15:59104000-59157200	Weak transcription	NHLF	lung
19	chr15:59105000-59139800	Weak transcription	HMEC	breast
20	chr15:59106000-59139200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:59106000-59139600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:59106000-59156800	Weak transcription	Lung	lung
23	chr15:59106200-59137200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:59106200-59156800	Weak transcription	Ovary	ovary
25	chr15:59106200-59157000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:59106400-59139400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:59106600-59137600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr15:59106600-59146400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:59106600-59157000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:59106800-59139400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:59106800-59144600	Weak transcription	HSMMtube	muscle
32	chr15:59106800-59156400	Weak transcription	Fetal Kidney	kidney
33	chr15:59107200-59142000	Weak transcription	Brain Germinal Matrix	brain
34	chr15:59107200-59147600	Weak transcription	Osteobl	bone
35	chr15:59111800-59159600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:59112000-59139800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr15:59112000-59147800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:59115000-59146800	Weak transcription	HepG2	liver
39	chr15:59119200-59137200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:59119400-59128800	Weak transcription	Placenta	Placenta
41	chr15:59119400-59137600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:59119400-59137600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:59119400-59144000	Weak transcription	Fetal Brain Female	brain
44	chr15:59119600-59137600	Weak transcription	Fetal Muscle Leg	muscle
45	chr15:59119600-59137600	Weak transcription	NHDF-Ad	bronchial
46	chr15:59119600-59138800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:59119600-59149600	Weak transcription	Dnd41	blood
48	chr15:59119800-59137400	Weak transcription	Fetal Brain Male	brain
49	chr15:59119800-59137800	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:59119800-59139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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