Variant report

Variant	rs8025383
Chromosome Location	chr15:59066676-59066677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59002723..59004883-chr15:59065189..59066915,2	K562	blood:
2	chr15:59040077..59045685-chr15:59061303..59067063,14	K562	blood:
3	chr15:59064062..59066974-chr15:59068078..59069600,2	MCF-7	breast:
4	chr15:59065749..59068993-chr15:59071498..59074723,3	K562	blood:

Variant related genes	Relation type
ENSG00000137845	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11071397	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12437952	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12439231	0.80[ASN][1000 genomes]
rs12439632	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12591310	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12595057	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12900343	0.81[ASN][1000 genomes]
rs12915713	0.88[ASN][1000 genomes]
rs12917083	0.86[EUR][1000 genomes]
rs1426652	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1551445	0.85[ASN][1000 genomes]
rs2013098	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2414608	0.81[ASN][1000 genomes]
rs28394222	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28412567	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28470867	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28510910	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28536555	0.80[ASN][1000 genomes]
rs28701980	0.90[ASN][1000 genomes]
rs28733370	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28793354	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28800895	0.91[ASN][1000 genomes]
rs28876251	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28889637	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62002455	0.87[ASN][1000 genomes]
rs62002456	0.88[ASN][1000 genomes]
rs7165019	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7168825	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7169205	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7169796	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8029301	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv428638	chr15:59032300-59126567	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	esv3391323	chr15:59066469-59066695	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59062200-59067800	Active TSS	GM12878-XiMat	blood
2	chr15:59062400-59067400	Active TSS	Right Atrium	heart
3	chr15:59062400-59067800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:59062800-59066800	Active TSS	NHDF-Ad	bronchial
5	chr15:59062800-59067000	Active TSS	Stomach Smooth Muscle	stomach
6	chr15:59063000-59067400	Active TSS	NHEK	skin
7	chr15:59064600-59067200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr15:59064600-59069000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:59064600-59081000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:59064600-59085000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:59064600-59102800	Weak transcription	Lung	lung
12	chr15:59064600-59102800	Weak transcription	Pancreas	Pancrea
13	chr15:59064600-59103200	Weak transcription	Esophagus	oesophagus
14	chr15:59064600-59145600	Weak transcription	Gastric	stomach
15	chr15:59064800-59067200	Enhancers	Primary B cells from peripheral blood	blood
16	chr15:59064800-59067600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr15:59064800-59095400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:59065000-59069000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr15:59065200-59067000	Enhancers	Liver	Liver
20	chr15:59065200-59067200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr15:59065200-59069600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr15:59065200-59117800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:59065400-59068000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr15:59065600-59068600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr15:59065600-59082600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:59065800-59066800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr15:59065800-59067000	Enhancers	Rectal Smooth Muscle	rectum
28	chr15:59065800-59067000	Enhancers	Hela-S3	cervix
29	chr15:59065800-59067200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:59065800-59067200	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr15:59065800-59067400	Enhancers	Colon Smooth Muscle	Colon
32	chr15:59065800-59067800	Weak transcription	Small Intestine	intestine
33	chr15:59065800-59068400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:59065800-59069800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:59065800-59077800	Weak transcription	Psoas Muscle	Psoas
36	chr15:59065800-59082600	Weak transcription	Placenta	Placenta
37	chr15:59065800-59094600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr15:59065800-59095000	Weak transcription	Fetal Thymus	thymus
39	chr15:59065800-59102800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:59065800-59103200	Weak transcription	NH-A	brain
41	chr15:59065800-59142800	Weak transcription	Aorta	Aorta
42	chr15:59066000-59066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr15:59066000-59066800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:59066000-59066800	Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr15:59066000-59067000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:59066000-59067000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:59066000-59067000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:59066000-59067000	Enhancers	Adipose Nuclei	Adipose
49	chr15:59066000-59067000	Enhancers	Stomach Mucosa	stomach
50	chr15:59066000-59067200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links