Variant report

Variant	rs1552089
Chromosome Location	chr4:128001445-128001446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10025761	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10033566	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12499978	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12503518	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12503648	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12507660	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12509041	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12509058	0.91[ASN][1000 genomes]
rs1480898	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17212899	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17291185	0.95[EUR][1000 genomes]
rs17291532	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1871737	0.98[EUR][1000 genomes]
rs1871738	0.98[EUR][1000 genomes]
rs4385081	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7659822	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353295	chr4:127994396-128017617	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128001200-128001800	Enhancers	Fetal Lung	lung
2	chr4:128001400-128002600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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