Variant report

Variant	rs17291185
Chromosome Location	chr4:127992708-127992709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10025761	0.94[EUR][1000 genomes]
rs10033566	0.91[EUR][1000 genomes]
rs12499978	0.98[EUR][1000 genomes]
rs12503518	0.94[EUR][1000 genomes]
rs12503648	0.94[EUR][1000 genomes]
rs12507660	0.95[EUR][1000 genomes]
rs12509041	0.94[EUR][1000 genomes]
rs1480898	0.94[EUR][1000 genomes]
rs1552089	1.00[CEU][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs17211707	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17212899	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17265230	1.00[ASN][1000 genomes]
rs17291532	0.98[EUR][1000 genomes]
rs1871737	0.93[EUR][1000 genomes]
rs1871738	0.93[EUR][1000 genomes]
rs4385081	0.84[EUR][1000 genomes]
rs7655747	1.00[ASN][1000 genomes]
rs7659822	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17291185	INTU	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127990600-127993400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:127992400-127993200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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