Variant report

Variant	rs17265230
Chromosome Location	chr4:127767516-127767517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127761402..127763975-chr4:127765998..127768528,2	K562	blood:
2	chr4:127765926..127767639-chr4:127769595..127772371,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1167191	1.00[ASN][1000 genomes]
rs1167193	1.00[ASN][1000 genomes]
rs11736466	1.00[ASN][1000 genomes]
rs12500894	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12508795	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508922	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12648553	1.00[ASN][1000 genomes]
rs1393992	1.00[ASN][1000 genomes]
rs1503607	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503629	1.00[ASN][1000 genomes]
rs17202524	1.00[ASN][1000 genomes]
rs17204565	1.00[ASN][1000 genomes]
rs17205524	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17262874	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17291185	1.00[ASN][1000 genomes]
rs1910440	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs192855	1.00[ASN][1000 genomes]
rs2174182	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220087	1.00[ASN][1000 genomes]
rs2202278	1.00[ASN][1000 genomes]
rs2221359	1.00[ASN][1000 genomes]
rs2391098	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637572	1.00[ASN][1000 genomes]
rs2637574	1.00[ASN][1000 genomes]
rs2969612	1.00[ASN][1000 genomes]
rs313068	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs313073	1.00[ASN][1000 genomes]
rs313074	1.00[ASN][1000 genomes]
rs313078	1.00[ASN][1000 genomes]
rs313079	1.00[ASN][1000 genomes]
rs313080	1.00[ASN][1000 genomes]
rs313113	1.00[ASN][1000 genomes]
rs313114	1.00[ASN][1000 genomes]
rs313117	1.00[ASN][1000 genomes]
rs313122	1.00[ASN][1000 genomes]
rs313125	1.00[ASN][1000 genomes]
rs313128	1.00[ASN][1000 genomes]
rs35780812	1.00[ASN][1000 genomes]
rs386871	1.00[ASN][1000 genomes]
rs411063	1.00[ASN][1000 genomes]
rs433919	1.00[ASN][1000 genomes]
rs4429742	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs450760	1.00[ASN][1000 genomes]
rs4580666	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6534580	1.00[ASN][1000 genomes]
rs6821115	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655747	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672599	1.00[ASN][1000 genomes]
rs7675809	1.00[ASN][1000 genomes]
rs7697724	0.83[CEU][hapmap]
rs951783	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3367258	chr4:127749396-127772702	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127765200-127771600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:127767200-127767600	ZNF genes & repeats	K562	blood
3	chr4:127767400-127770600	Weak transcription	HMEC	breast

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