Variant report

Variant	rs1552288
Chromosome Location	chr15:59689784-59689785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11631332	0.84[ASN][1000 genomes]
rs58617007	0.85[EUR][1000 genomes]
rs61654958	0.86[ASN][1000 genomes]
rs66788165	0.86[ASN][1000 genomes]
rs7177667	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs900825	0.85[CEU][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv904275	chr15:59648633-59726610	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a
4	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
5	nsv904277	chr15:59666992-59705005	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
6	nsv524569	chr15:59666992-59712427	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59665800-59691800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:59667400-59691800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:59675200-59703000	Weak transcription	Aorta	Aorta
4	chr15:59678000-59693400	Weak transcription	Liver	Liver
5	chr15:59681400-59694200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:59685000-59691400	Enhancers	Primary B cells from peripheral blood	blood
7	chr15:59685200-59691800	Weak transcription	Spleen	Spleen
8	chr15:59687000-59691600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:59687200-59691800	Weak transcription	Placenta	Placenta
10	chr15:59688200-59690200	Weak transcription	GM12878-XiMat	blood
11	chr15:59688400-59698800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr15:59688600-59690400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:59688800-59691400	Enhancers	Primary B cells from cord blood	blood
14	chr15:59689200-59693800	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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