Variant report

Variant	rs58617007
Chromosome Location	chr15:59694003-59694004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1552288	0.85[EUR][1000 genomes]
rs66788165	0.80[AMR][1000 genomes]
rs7177667	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv904275	chr15:59648633-59726610	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a
4	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
5	nsv904277	chr15:59666992-59705005	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
6	nsv524569	chr15:59666992-59712427	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
7	nsv974585	chr15:59693187-59700169	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59675200-59703000	Weak transcription	Aorta	Aorta
2	chr15:59681400-59694200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:59688400-59698800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:59690400-59694200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr15:59690800-59695600	Weak transcription	Lung	lung
6	chr15:59690800-59702600	Weak transcription	Left Ventricle	heart
7	chr15:59691800-59694600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr15:59692000-59694800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr15:59692600-59694800	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr15:59692600-59698000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:59692600-59701400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:59692800-59694200	Weak transcription	Small Intestine	intestine
13	chr15:59692800-59694600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr15:59692800-59694800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:59692800-59694800	Enhancers	Primary B cells from peripheral blood	blood
16	chr15:59692800-59694800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:59692800-59694800	Enhancers	Brain Germinal Matrix	brain
18	chr15:59692800-59695600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:59692800-59698200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:59692800-59704800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:59693000-59694200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:59693000-59694400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:59693000-59694800	Enhancers	Primary B cells from cord blood	blood
24	chr15:59693000-59695800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr15:59693000-59704800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:59693000-59704800	Weak transcription	Spleen	Spleen
27	chr15:59693000-59705000	Weak transcription	Fetal Thymus	thymus
28	chr15:59693400-59694400	Enhancers	Liver	Liver
29	chr15:59693400-59694600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr15:59693600-59694600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr15:59693600-59695000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr15:59693600-59700000	Weak transcription	Pancreas	Pancrea
33	chr15:59693600-59702200	Weak transcription	Colonic Mucosa	Colon
34	chr15:59693800-59694200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr15:59693800-59694400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr15:59693800-59694400	Enhancers	A549	lung
37	chr15:59693800-59694600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:59693800-59694600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:59693800-59698400	Weak transcription	Brain Hippocampus Middle	brain
40	chr15:59694000-59694200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:59694000-59694200	Enhancers	Adipose Nuclei	Adipose
42	chr15:59694000-59694400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:59694000-59694400	Enhancers	Stomach Mucosa	stomach
44	chr15:59694000-59694600	Bivalent Enhancer	HepG2	liver
45	chr15:59694000-59694800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:59694000-59695000	Enhancers	GM12878-XiMat	blood

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