Variant report

Variant	rs1553046
Chromosome Location	chr4:55778856-55778857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10003615	1.00[EUR][1000 genomes]
rs11133349	0.96[AFR][1000 genomes]
rs1119544	0.95[AFR][1000 genomes]
rs11941371	1.00[EUR][1000 genomes]
rs2088401	0.95[AFR][1000 genomes]
rs6851808	0.94[AFR][1000 genomes]
rs904131	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55769600-55780200	Weak transcription	Aorta	Aorta
2	chr4:55776400-55779200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:55776600-55779800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:55776600-55780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:55776800-55779800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:55777000-55780000	Weak transcription	Fetal Stomach	stomach
7	chr4:55778000-55780200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:55778200-55779000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:55778200-55779000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:55778400-55779200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:55778400-55779200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:55778600-55779200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:55778600-55779400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:55778600-55779800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:55778600-55779800	Weak transcription	Left Ventricle	heart
16	chr4:55778600-55779800	Weak transcription	Right Atrium	heart
17	chr4:55778600-55780000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:55778600-55780400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:55778800-55779200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:55778800-55780000	Weak transcription	Esophagus	oesophagus
21	chr4:55778800-55781400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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