Variant report

Variant	rs11133349
Chromosome Location	chr4:55778468-55778469
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55771151..55772935-chr4:55776750..55778568,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10014134	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026756	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1119544	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1119545	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721408	1.00[JPT][hapmap]
rs11722896	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725129	1.00[ASN][1000 genomes]
rs11732198	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732768	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734032	1.00[ASN][1000 genomes]
rs11737870	1.00[ASN][1000 genomes]
rs12639867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12639878	0.81[EUR][1000 genomes]
rs12643767	1.00[ASN][1000 genomes]
rs12646789	1.00[ASN][1000 genomes]
rs12646878	1.00[ASN][1000 genomes]
rs12647496	1.00[ASN][1000 genomes]
rs12648485	1.00[ASN][1000 genomes]
rs12648946	1.00[ASN][1000 genomes]
rs12649626	1.00[ASN][1000 genomes]
rs13135562	1.00[CHB][hapmap]
rs1497480	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497490	1.00[ASN][1000 genomes]
rs1497500	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553046	0.96[AFR][1000 genomes]
rs17084864	1.00[ASN][1000 genomes]
rs17084965	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085031	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085085	0.98[EUR][1000 genomes]
rs1874651	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088401	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435700	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34948390	1.00[ASN][1000 genomes]
rs56288580	1.00[ASN][1000 genomes]
rs57491061	1.00[ASN][1000 genomes]
rs59049699	1.00[ASN][1000 genomes]
rs59527347	1.00[ASN][1000 genomes]
rs60317592	1.00[ASN][1000 genomes]
rs66857866	1.00[ASN][1000 genomes]
rs67682137	1.00[ASN][1000 genomes]
rs68139100	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833710	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851808	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73143580	1.00[ASN][1000 genomes]
rs73234251	1.00[ASN][1000 genomes]
rs73234252	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234255	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234258	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234260	1.00[ASN][1000 genomes]
rs73234262	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234264	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234265	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234268	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234269	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234271	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234272	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234273	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234275	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234276	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234277	1.00[ASN][1000 genomes]
rs7663862	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682627	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690257	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904130	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904132	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904133	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969341	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55769600-55780200	Weak transcription	Aorta	Aorta
2	chr4:55776400-55779200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:55776600-55778800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:55776600-55779800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:55776600-55780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:55776800-55778600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:55776800-55779800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:55777000-55780000	Weak transcription	Fetal Stomach	stomach
9	chr4:55778000-55780200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:55778200-55778600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:55778200-55778600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr4:55778200-55779000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:55778200-55779000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:55778400-55778600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr4:55778400-55778600	Enhancers	Esophagus	oesophagus
16	chr4:55778400-55778600	Enhancers	Left Ventricle	heart
17	chr4:55778400-55778600	Enhancers	Right Atrium	heart
18	chr4:55778400-55779200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr4:55778400-55779200	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links