Variant report

Variant	rs969341
Chromosome Location	chr4:55790669-55790670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55790255..55793084-chr4:55793676..55796290,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10014134	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026756	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11133349	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1119544	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1119545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721408	1.00[JPT][hapmap];0.86[MEX][hapmap]
rs11722896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725129	1.00[ASN][1000 genomes]
rs11732198	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732768	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734032	1.00[ASN][1000 genomes]
rs11737870	1.00[ASN][1000 genomes]
rs12639867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.83[EUR][1000 genomes]
rs12639878	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12643767	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12646789	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12646878	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12647496	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648485	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648946	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649626	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13135562	1.00[CHB][hapmap]
rs1497480	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497490	1.00[ASN][1000 genomes]
rs1497500	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084864	1.00[ASN][1000 genomes]
rs17084965	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085031	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085085	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1874651	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088401	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435700	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34948390	1.00[ASN][1000 genomes]
rs56288580	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57491061	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59049699	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59527347	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60317592	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66857866	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67682137	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68139100	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833710	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851808	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73143580	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234251	1.00[ASN][1000 genomes]
rs73234252	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234255	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234258	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234260	1.00[ASN][1000 genomes]
rs73234262	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234264	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234265	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234268	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234269	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234275	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234276	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234277	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7663862	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682627	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690257	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904130	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904132	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904133	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55790200-55791000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:55790400-55793000	Enhancers	Stomach Mucosa	stomach
3	chr4:55790600-55791600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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