Variant report

Variant	rs1497490
Chromosome Location	chr4:55701134-55701135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10014134	1.00[ASN][1000 genomes]
rs10026756	1.00[ASN][1000 genomes]
rs11133349	1.00[ASN][1000 genomes]
rs1119544	1.00[ASN][1000 genomes]
rs1119545	1.00[ASN][1000 genomes]
rs11721408	1.00[JPT][hapmap]
rs11722896	1.00[ASN][1000 genomes]
rs11725129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732198	1.00[ASN][1000 genomes]
rs11732768	1.00[ASN][1000 genomes]
rs11734032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639867	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12643767	1.00[ASN][1000 genomes]
rs12646789	1.00[ASN][1000 genomes]
rs12646878	1.00[ASN][1000 genomes]
rs12647496	1.00[ASN][1000 genomes]
rs12648485	1.00[ASN][1000 genomes]
rs12648946	1.00[ASN][1000 genomes]
rs12649626	1.00[ASN][1000 genomes]
rs1497480	1.00[ASN][1000 genomes]
rs1497500	1.00[ASN][1000 genomes]
rs17084864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084965	1.00[ASN][1000 genomes]
rs17085031	1.00[ASN][1000 genomes]
rs1874651	1.00[ASN][1000 genomes]
rs2088401	1.00[ASN][1000 genomes]
rs28435700	1.00[ASN][1000 genomes]
rs34948390	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288580	1.00[ASN][1000 genomes]
rs57491061	1.00[ASN][1000 genomes]
rs59049699	1.00[ASN][1000 genomes]
rs59527347	1.00[ASN][1000 genomes]
rs60317592	1.00[ASN][1000 genomes]
rs66857866	1.00[ASN][1000 genomes]
rs67682137	1.00[ASN][1000 genomes]
rs68139100	1.00[ASN][1000 genomes]
rs6833710	1.00[ASN][1000 genomes]
rs6851808	1.00[ASN][1000 genomes]
rs73143580	1.00[ASN][1000 genomes]
rs73234251	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234252	1.00[ASN][1000 genomes]
rs73234255	1.00[ASN][1000 genomes]
rs73234258	1.00[ASN][1000 genomes]
rs73234260	1.00[ASN][1000 genomes]
rs73234262	1.00[ASN][1000 genomes]
rs73234264	1.00[ASN][1000 genomes]
rs73234265	1.00[ASN][1000 genomes]
rs73234268	1.00[ASN][1000 genomes]
rs73234269	1.00[ASN][1000 genomes]
rs73234271	1.00[ASN][1000 genomes]
rs73234272	1.00[ASN][1000 genomes]
rs73234273	1.00[ASN][1000 genomes]
rs73234275	1.00[ASN][1000 genomes]
rs73234276	1.00[ASN][1000 genomes]
rs73234277	1.00[ASN][1000 genomes]
rs7663862	1.00[ASN][1000 genomes]
rs7682627	1.00[ASN][1000 genomes]
rs7690257	1.00[ASN][1000 genomes]
rs904130	1.00[ASN][1000 genomes]
rs904132	1.00[ASN][1000 genomes]
rs904133	1.00[ASN][1000 genomes]
rs969341	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1836939	chr4:55701134-55716601	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55691200-55702200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:55698200-55703800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:55701000-55701200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links