Variant report

Variant	rs1553769
Chromosome Location	chr11:109003536-109003537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11212953	0.96[ASN][1000 genomes]
rs11212954	1.00[ASN][1000 genomes]
rs11212955	0.98[ASN][1000 genomes]
rs11212956	0.83[ASN][1000 genomes]
rs11827932	0.98[ASN][1000 genomes]
rs1509731	1.00[ASN][1000 genomes]
rs17633668	0.98[ASN][1000 genomes]
rs2136538	0.82[AFR][1000 genomes]
rs2221724	0.81[ASN][1000 genomes]
rs4754384	1.00[ASN][1000 genomes]
rs55664558	0.96[ASN][1000 genomes]
rs61913335	1.00[ASN][1000 genomes]
rs61913336	1.00[ASN][1000 genomes]
rs61913337	1.00[ASN][1000 genomes]
rs7934323	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109002000-109003600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:109002800-109003800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr11:109003000-109003600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:109003000-109004000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr11:109003200-109003600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:109003200-109003600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:109003200-109003800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:109003400-109003600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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