Variant report

Variant	rs11212954
Chromosome Location	chr11:109012822-109012823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11212934	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11212953	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212955	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212956	0.83[ASN][1000 genomes]
rs11820844	0.96[AMR][1000 genomes]
rs11827932	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12364912	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1509731	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553769	1.00[ASN][1000 genomes]
rs17633668	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2221724	0.81[ASN][1000 genomes]
rs4753862	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4754382	0.96[AMR][1000 genomes]
rs4754384	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55664558	0.96[ASN][1000 genomes]
rs61913335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61913336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61913337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934323	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109011800-109013200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:109012000-109013600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:109012000-109021200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:109012000-109021400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:109012400-109013200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:109012800-109018800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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