Variant report

Variant	rs4754382
Chromosome Location	chr11:108985184-108985185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11212934	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11212953	0.96[AMR][1000 genomes]
rs11212954	0.96[AMR][1000 genomes]
rs11212955	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11820844	1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11827932	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12364912	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1509731	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17633668	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4753862	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61913335	0.96[AMR][1000 genomes]
rs61913336	0.96[AMR][1000 genomes]
rs61913337	0.96[AMR][1000 genomes]
rs7934323	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108982600-108986000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr11:108982800-108985400	Enhancers	Fetal Brain Male	brain
3	chr11:108982800-108985400	Enhancers	Fetal Brain Female	brain
4	chr11:108983000-108986000	Enhancers	Brain Germinal Matrix	brain
5	chr11:108984200-108988800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:108984200-108991000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:108984400-108990400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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