Variant report

Variant	rs1554012
Chromosome Location	chr2:177644582-177644583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1004651	1.00[CHD][hapmap]
rs10181816	1.00[CHB][hapmap]
rs10184702	1.00[CHB][hapmap]
rs10184742	1.00[CHD][hapmap]
rs10197209	1.00[CHB][hapmap]
rs10497573	1.00[CHB][hapmap]
rs11679607	1.00[CHD][hapmap]
rs12469347	1.00[CHB][hapmap]
rs12477377	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12693105	1.00[CHB][hapmap]
rs1437724	0.84[GIH][hapmap];0.82[JPT][hapmap]
rs1437725	1.00[CHB][hapmap]
rs1513886	1.00[CHB][hapmap]
rs1533303	1.00[CHB][hapmap]
rs1534472	1.00[CHB][hapmap]
rs1545138	1.00[CHB][hapmap]
rs1554824	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16864479	1.00[CHB][hapmap]
rs16864480	1.00[CHD][hapmap]
rs4893917	1.00[CHB][hapmap]
rs62174238	0.83[EUR][1000 genomes]
rs7569150	0.84[GIH][hapmap];0.82[JPT][hapmap]
rs7577987	1.00[CHD][hapmap]
rs7578081	1.00[CHD][hapmap]
rs7588841	1.00[CHB][hapmap]
rs840698	1.00[CHB][hapmap]
rs840699	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1554012	OLA1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177628800-177655400	Weak transcription	Ovary	ovary
2	chr2:177643800-177644600	Enhancers	Aorta	Aorta
3	chr2:177644000-177649600	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:177644200-177649000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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