Variant report

Variant	rs11679607
Chromosome Location	chr2:177711791-177711792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1004651	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10184742	1.00[CHD][hapmap]
rs16864480	1.00[CHD][hapmap]
rs16864611	0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6706678	1.00[ASN][1000 genomes]
rs6710290	1.00[ASN][1000 genomes]
rs6736038	1.00[ASN][1000 genomes]
rs73026252	1.00[ASN][1000 genomes]
rs7577987	1.00[CHD][hapmap]
rs7578081	1.00[CHD][hapmap]
rs9677828	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459953	chr2:177704321-177720675	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv583687	chr2:177704321-177720675	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11679607	PLEKHA3	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177710000-177716800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:177710600-177716000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:177710800-177715000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr2:177710800-177716600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:177711400-177715800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr2:177711600-177713800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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