Variant report

Variant	rs6710290
Chromosome Location	chr2:177744671-177744672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1004651	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10184742	1.00[CHD][hapmap]
rs11679607	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16864480	1.00[CHD][hapmap]
rs16864611	1.00[ASN][1000 genomes]
rs6706678	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707630	1.00[CEU][hapmap]
rs6736038	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6737247	1.00[CEU][hapmap]
rs73026252	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577987	1.00[CHD][hapmap]
rs7578081	1.00[CHD][hapmap]
rs7603168	1.00[CEU][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap]
rs9677828	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177744000-177745400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:177744400-177745400	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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