Variant report

Variant	rs16864611
Chromosome Location	chr2:177719376-177719377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177709383..177714584-chr2:177715247..177719528,6	K562	blood:

Variant related genes	Relation type
ENSG00000227098	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1004651	0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11679607	0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6706678	1.00[ASN][1000 genomes]
rs6710290	1.00[ASN][1000 genomes]
rs6736038	1.00[ASN][1000 genomes]
rs73026252	1.00[ASN][1000 genomes]
rs9677828	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459953	chr2:177704321-177720675	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv583687	chr2:177704321-177720675	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177715800-177722800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr2:177716200-177722400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr2:177716600-177722200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr2:177716600-177722600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:177716600-177722600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr2:177716600-177722800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:177716800-177721400	Weak transcription	Fetal Kidney	kidney
8	chr2:177717600-177719400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr2:177717800-177719800	Weak transcription	Fetal Thymus	thymus
10	chr2:177717800-177721000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:177717800-177722400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr2:177718000-177719800	Weak transcription	Thymus	Thymus
13	chr2:177718400-177720000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr2:177718600-177719800	Enhancers	Duodenum Mucosa	Duodenum
15	chr2:177718800-177719800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:177718800-177722600	Weak transcription	Small Intestine	intestine
17	chr2:177719000-177721400	Weak transcription	Primary T cells from cord blood	blood
18	chr2:177719000-177724400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:177719200-177719600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:177719200-177720200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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