Variant report

Variant	rs1554013
Chromosome Location	chr4:76933484-76933485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr4:76933104-76933772	GM12878	blood:	n/a	n/a
2	WRNIP1	chr4:76932976-76933662	GM12878	blood:	n/a	n/a
3	POLR2A	chr4:76933150-76933754	GM12892	blood:	n/a	n/a
4	POLR2A	chr4:76932893-76933837	IMR90	lung:	n/a	n/a
5	TBL1XR1	chr4:76932893-76933814	GM12878	blood:	n/a	n/a
6	IKZF1	chr4:76932864-76933846	GM12878	blood:	n/a	n/a
7	FOXM1	chr4:76932821-76933866	GM12878	blood:	n/a	n/a
8	RUNX3	chr4:76932773-76933729	GM12878	blood:	n/a	n/a
9	MTA3	chr4:76932535-76933903	GM12878	blood:	n/a	n/a
10	NFIC	chr4:76932794-76933946	GM12878	blood:	n/a	n/a
11	BHLHE40	chr4:76933315-76933884	GM12878	blood:	n/a	n/a
12	ATF2	chr4:76933124-76933752	GM12878	blood:	n/a	n/a
13	TCF12	chr4:76933283-76933647	GM12878	blood:	n/a	n/a
14	TCF3	chr4:76933342-76933577	GM12878	blood:	n/a	n/a
15	RELA	chr4:76932980-76933815	GM19193	blood:	n/a	n/a
16	RELA	chr4:76932875-76933845	GM19099	blood:	n/a	n/a
17	BATF	chr4:76933233-76933693	GM12878	blood:	n/a	n/a
18	SPI1	chr4:76933208-76933711	HL-60	blood:	n/a	n/a
19	ZNF143	chr4:76932850-76933703	GM12878	blood:	n/a	n/a
20	FOXM1	chr4:76933066-76933838	GM12878	blood:	n/a	n/a
21	STAT5A	chr4:76932996-76933691	GM12878	blood:	n/a	chr4:76933085-76933096
22	CUX1	chr4:76933277-76933692	GM12878	blood:	n/a	n/a
23	BCL11A	chr4:76933204-76933672	GM12878	blood:	n/a	chr4:76933481-76933490
24	RUNX3	chr4:76932817-76933771	GM12878	blood:	n/a	n/a
25	NFIC	chr4:76932759-76933924	GM12878	blood:	n/a	n/a
26	PAX5	chr4:76933280-76933511	GM12878	blood:	n/a	n/a
27	SPI1	chr4:76933212-76933619	GM12878	blood:	n/a	n/a
28	SPI1	chr4:76933216-76933614	GM12891	blood:	n/a	n/a
29	EBF1	chr4:76933295-76933754	GM12878	blood:	n/a	chr4:76933557-76933570 chr4:76933557-76933568
30	BCLAF1	chr4:76933070-76933755	GM12878	blood:	n/a	chr4:76933481-76933490
31	RELA	chr4:76932822-76933867	GM18505	blood:	n/a	n/a
32	EBF1	chr4:76932919-76934343	GM12878	blood:	n/a	chr4:76933557-76933570 chr4:76933557-76933568
33	POLR2A	chr4:76933193-76933634	GM12878	blood:	n/a	n/a
34	TCF12	chr4:76933296-76933660	GM12878	blood:	n/a	n/a
35	RELA	chr4:76932799-76933753	GM18951	blood:	n/a	n/a
36	RELA	chr4:76932989-76933837	GM12878	blood:	n/a	n/a
37	EP300	chr4:76933200-76933712	GM12878	blood:	n/a	chr4:76933580-76933594
38	POLR2A	chr4:76932640-76933648	GM12892	blood:	n/a	n/a
39	MAX	chr4:76933289-76933493	GM12878	blood:	n/a	n/a
40	PML	chr4:76932973-76933794	GM12878	blood:	n/a	n/a
41	MEF2A	chr4:76933084-76933797	GM12878	blood:	n/a	n/a
42	EBF1	chr4:76933279-76933780	GM12878	blood:	n/a	chr4:76933557-76933570 chr4:76933557-76933568
43	POLR2A	chr4:76933162-76933583	GM12892	blood:	n/a	n/a
44	BCL11A	chr4:76933305-76933551	GM12878	blood:	n/a	chr4:76933481-76933490
45	ATF2	chr4:76932697-76933894	GM12878	blood:	n/a	n/a
46	BATF	chr4:76933192-76933761	GM12878	blood:	n/a	n/a
47	EP300	chr4:76933185-76933824	GM12878	blood:	n/a	chr4:76933580-76933594
48	BCL3	chr4:76933285-76933688	GM12878	blood:	n/a	chr4:76933481-76933490

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76932434..76934325-chr4:76957722..76960530,2	K562	blood:

Variant related genes	Relation type
CXCL9	TF binding region
ENSG00000225846	Chromatin interaction

Extended variants
information (count: 213 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:210)

rs_ID	r²[population]
rs10000130	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10002099	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10002290	0.84[EUR][1000 genomes]
rs10003240	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10003382	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10008757	0.83[ASN][1000 genomes]
rs10010920	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10014049	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10014837	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10017431	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10021768	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10025102	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10025201	0.81[EUR][1000 genomes]
rs10025302	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10025412	0.85[EUR][1000 genomes]
rs10031452	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033061	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10034055	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10856873	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11097212	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097219	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11947509	0.83[ASN][1000 genomes]
rs12502834	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12510335	0.87[EUR][1000 genomes]
rs12647111	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13105341	0.81[EUR][1000 genomes]
rs13111790	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13113455	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13113632	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13128319	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13130018	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13130221	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13133745	0.80[EUR][1000 genomes]
rs13138901	0.82[EUR][1000 genomes]
rs17288671	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2242471	0.83[ASN][1000 genomes]
rs2242473	0.83[ASN][1000 genomes]
rs2242474	0.83[ASN][1000 genomes]
rs2273	0.83[ASN][1000 genomes]
rs28433437	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28494900	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28505472	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28548768	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28642977	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28681066	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28681694	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28757394	0.80[EUR][1000 genomes]
rs28848839	0.87[EUR][1000 genomes]
rs28868672	0.83[EUR][1000 genomes]
rs28896243	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3921	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4129781	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4241578	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4241579	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4241580	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4241581	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4257674	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4276310	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4282209	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4302486	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4304003	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4309862	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4318674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331799	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4337760	0.83[ASN][1000 genomes]
rs4345214	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4356932	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4359936	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4359937	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4371639	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4373188	0.89[EUR][1000 genomes]
rs4380549	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4386624	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4394024	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4401475	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4406046	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4417995	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4422436	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4432767	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4435768	0.89[EUR][1000 genomes]
rs4456983	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4478212	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4512021	0.82[AMR][1000 genomes]
rs4524415	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4529084	0.80[EUR][1000 genomes]
rs4532263	0.88[EUR][1000 genomes]
rs4535358	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4541535	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4543142	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4543147	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4547819	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4580676	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4583787	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4593163	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4610366	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4616778	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4619915	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4637430	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4643846	0.86[EUR][1000 genomes]
rs4859413	0.83[ASN][1000 genomes]
rs4859414	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859415	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859581	0.83[ASN][1000 genomes]
rs4859582	0.83[ASN][1000 genomes]
rs4859584	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859586	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859587	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859588	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859589	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4859590	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859591	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859594	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4859595	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859597	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859598	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859599	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4859600	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859601	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4859602	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4859603	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859604	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859605	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859606	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6532078	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6532083	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532086	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532093	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532101	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6532103	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6532105	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6532111	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532114	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532121	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532130	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6532142	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532143	0.91[EUR][1000 genomes]
rs6532153	0.81[EUR][1000 genomes]
rs6532155	0.90[EUR][1000 genomes]
rs6532156	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532157	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532158	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532159	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532160	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532161	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532163	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532164	0.80[EUR][1000 genomes]
rs6532165	0.80[EUR][1000 genomes]
rs6532166	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532172	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6811252	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6811301	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6811469	0.88[EUR][1000 genomes]
rs6814012	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6814817	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6816898	0.87[EUR][1000 genomes]
rs6819597	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6819920	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6825045	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6826085	0.83[ASN][1000 genomes]
rs6826163	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6826398	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6826406	0.84[EUR][1000 genomes]
rs6827128	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6827767	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6828596	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6829896	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6833788	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6835736	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6837830	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6844097	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845154	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6845198	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6845396	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6848603	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6848620	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6850515	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6850760	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6852075	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6856681	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6856958	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6857372	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7375677	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7376624	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7376943	0.85[EUR][1000 genomes]
rs7377856	0.90[EUR][1000 genomes]
rs73825703	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7436021	0.83[ASN][1000 genomes]
rs7436646	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7655350	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7664354	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7665152	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7670789	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7674409	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7676265	0.85[EUR][1000 genomes]
rs7677924	0.83[EUR][1000 genomes]
rs7683657	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7684461	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7684889	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7688306	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7689664	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7699624	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8878	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9307050	0.83[ASN][1000 genomes]
rs9884374	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9990733	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9992010	0.85[EUR][1000 genomes]
rs9992952	0.81[ASN][1000 genomes]
rs9995007	0.83[ASN][1000 genomes]
rs9999755	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs1554013	NAAA	cis	Skin Sun Exposed Lower leg	GTEx
rs1554013	NAAA	cis	Artery Aorta	GTEx
rs1554013	NAAA	cis	Nerve Tibial	GTEx
rs1554013	NAAA	cis	Artery Tibial	GTEx
rs1554013	NAAA	cis	lung	GTEx
rs1554013	NAAA	cis	Muscle Skeletal	GTEx
rs1554013	ART3	cis	Nerve Tibial	GTEx
rs1554013	NAAA	cis	Heart Left Ventricle	GTEx
rs1554013	ASAHL	cis	multi-tissue	Pritchard
rs1554013	NAAA	cis	Whole Blood	GTEx
rs1554013	NAAA	cis	Adipose Subcutaneous	GTEx
rs1554013	NAAA	cis	Esophagus Muscularis	GTEx
rs1554013	ASAHL	Cis_1M	lymphoblastoid	RTeQTL
rs1554013	NAAA	cis	Esophagus Mucosa	GTEx
rs1554013	CXCL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76929000-76934200	Weak transcription	Fetal Intestine Small	intestine
2	chr4:76932000-76934400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:76932200-76934000	Enhancers	Fetal Stomach	stomach
4	chr4:76932400-76934000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:76932400-76934400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:76932600-76933600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:76932600-76933600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:76932600-76933600	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr4:76932600-76933800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:76932600-76934000	Flanking Active TSS	GM12878-XiMat	blood
11	chr4:76932600-76934400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:76932600-76934400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:76932600-76935400	Enhancers	Liver	Liver
14	chr4:76932800-76933600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:76932800-76933600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:76932800-76933600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:76932800-76933600	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr4:76932800-76933600	Flanking Active TSS	NHEK	skin
19	chr4:76932800-76933600	Flanking Active TSS	Osteobl	bone
20	chr4:76932800-76933800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:76932800-76933800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:76932800-76933800	Enhancers	HSMM	muscle
23	chr4:76932800-76933800	Enhancers	NH-A	brain
24	chr4:76932800-76934000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr4:76932800-76934000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:76932800-76934400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr4:76932800-76934400	Enhancers	Primary B cells from peripheral blood	blood
28	chr4:76933000-76933600	Enhancers	Primary B cells from cord blood	blood
29	chr4:76933000-76933800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr4:76933000-76933800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:76933000-76933800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr4:76933000-76933800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr4:76933000-76934400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr4:76933000-76934400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:76933000-76934400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr4:76933000-76934400	Weak transcription	Lung	lung
37	chr4:76933000-76937400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:76933000-76937600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr4:76933000-76937600	Weak transcription	Placenta	Placenta
40	chr4:76933000-76937600	Weak transcription	Pancreas	Pancrea
41	chr4:76933200-76934000	Enhancers	Primary hematopoietic stem cells	blood
42	chr4:76933200-76934200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr4:76933400-76933600	Enhancers	Fetal Thymus	thymus
44	chr4:76933400-76933600	Flanking Active TSS	NHLF	lung
45	chr4:76933400-76933800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:76933400-76933800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:76933400-76933800	Flanking Active TSS	Colon Smooth Muscle	Colon
48	chr4:76933400-76933800	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr4:76933400-76934000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr4:76933400-76934000	Enhancers	Rectal Smooth Muscle	rectum

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