Variant report

Variant	rs7676265
Chromosome Location	chr4:76997258-76997259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 189 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:186)

rs_ID	r²[population]
rs10000130	0.85[EUR][1000 genomes]
rs10002099	0.86[EUR][1000 genomes]
rs10002290	0.81[EUR][1000 genomes]
rs10003240	0.86[EUR][1000 genomes]
rs10003382	0.86[EUR][1000 genomes]
rs10010920	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10014049	0.86[EUR][1000 genomes]
rs10014837	0.86[EUR][1000 genomes]
rs10017431	0.86[EUR][1000 genomes]
rs10021768	0.86[EUR][1000 genomes]
rs10025102	0.86[EUR][1000 genomes]
rs10025302	0.87[EUR][1000 genomes]
rs10025412	0.82[EUR][1000 genomes]
rs10031452	0.84[EUR][1000 genomes]
rs10033061	0.88[EUR][1000 genomes]
rs10034055	0.90[EUR][1000 genomes]
rs10336	0.84[EUR][1000 genomes]
rs10856873	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11097212	0.86[EUR][1000 genomes]
rs11097219	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12502834	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12510335	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12647111	0.87[EUR][1000 genomes]
rs13111790	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13113455	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13113632	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13128319	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13130018	0.86[EUR][1000 genomes]
rs13130221	0.86[EUR][1000 genomes]
rs13133745	0.80[EUR][1000 genomes]
rs13138901	0.81[EUR][1000 genomes]
rs1554013	0.85[EUR][1000 genomes]
rs17288671	0.83[EUR][1000 genomes]
rs28433437	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28494900	0.83[EUR][1000 genomes]
rs28505472	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28548768	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28642977	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28681066	0.89[EUR][1000 genomes]
rs28681694	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28757394	0.80[EUR][1000 genomes]
rs28848839	0.84[EUR][1000 genomes]
rs28868672	0.80[EUR][1000 genomes]
rs28896243	0.89[EUR][1000 genomes]
rs3921	0.85[EUR][1000 genomes]
rs4129781	0.88[EUR][1000 genomes]
rs4241578	0.86[EUR][1000 genomes]
rs4241579	0.86[EUR][1000 genomes]
rs4241580	0.86[EUR][1000 genomes]
rs4241581	0.88[EUR][1000 genomes]
rs4257674	0.86[EUR][1000 genomes]
rs4276310	0.89[EUR][1000 genomes]
rs4302486	0.86[EUR][1000 genomes]
rs4304003	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4309862	0.86[EUR][1000 genomes]
rs4318674	0.85[EUR][1000 genomes]
rs4331799	0.85[EUR][1000 genomes]
rs4345214	0.86[EUR][1000 genomes]
rs4356932	0.86[EUR][1000 genomes]
rs4359936	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4359937	0.89[EUR][1000 genomes]
rs4371639	0.85[EUR][1000 genomes]
rs4373188	0.86[EUR][1000 genomes]
rs4380549	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4386624	0.86[EUR][1000 genomes]
rs4394024	0.88[EUR][1000 genomes]
rs4401475	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4406046	0.88[EUR][1000 genomes]
rs4417995	0.86[EUR][1000 genomes]
rs4422436	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4432767	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4435768	0.87[EUR][1000 genomes]
rs4456983	0.88[EUR][1000 genomes]
rs4478212	0.88[EUR][1000 genomes]
rs4524415	0.88[EUR][1000 genomes]
rs4532263	0.85[EUR][1000 genomes]
rs4535358	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4541535	0.90[EUR][1000 genomes]
rs4543142	0.89[EUR][1000 genomes]
rs4543147	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4547819	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4550961	0.84[EUR][1000 genomes]
rs4580676	0.86[EUR][1000 genomes]
rs4583787	0.86[EUR][1000 genomes]
rs4593163	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4605683	0.84[EUR][1000 genomes]
rs4610366	0.90[EUR][1000 genomes]
rs4616778	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4619915	0.85[EUR][1000 genomes]
rs4637430	0.88[EUR][1000 genomes]
rs4643846	0.83[EUR][1000 genomes]
rs4859414	0.86[EUR][1000 genomes]
rs4859415	0.87[EUR][1000 genomes]
rs4859584	0.86[EUR][1000 genomes]
rs4859586	0.86[EUR][1000 genomes]
rs4859587	0.86[EUR][1000 genomes]
rs4859588	0.86[EUR][1000 genomes]
rs4859589	0.84[EUR][1000 genomes]
rs4859590	0.86[EUR][1000 genomes]
rs4859591	0.86[EUR][1000 genomes]
rs4859594	0.80[EUR][1000 genomes]
rs4859595	0.86[EUR][1000 genomes]
rs4859597	0.87[EUR][1000 genomes]
rs4859598	0.88[EUR][1000 genomes]
rs4859599	0.87[EUR][1000 genomes]
rs4859600	0.87[EUR][1000 genomes]
rs4859601	0.86[EUR][1000 genomes]
rs4859602	0.87[EUR][1000 genomes]
rs4859603	0.86[EUR][1000 genomes]
rs4859604	0.88[EUR][1000 genomes]
rs4859605	0.88[EUR][1000 genomes]
rs4859606	0.84[EUR][1000 genomes]
rs6532083	0.84[EUR][1000 genomes]
rs6532086	0.81[EUR][1000 genomes]
rs6532093	0.86[EUR][1000 genomes]
rs6532101	0.85[EUR][1000 genomes]
rs6532111	0.86[EUR][1000 genomes]
rs6532114	0.87[EUR][1000 genomes]
rs6532121	0.88[EUR][1000 genomes]
rs6532130	0.90[EUR][1000 genomes]
rs6532142	0.90[EUR][1000 genomes]
rs6532143	0.89[EUR][1000 genomes]
rs6532153	0.81[EUR][1000 genomes]
rs6532155	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6532156	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6532157	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6532158	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6532159	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6532160	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6532161	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6532163	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6532164	0.82[EUR][1000 genomes]
rs6532165	0.82[EUR][1000 genomes]
rs6532166	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6532172	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6811252	0.90[EUR][1000 genomes]
rs6811301	0.90[EUR][1000 genomes]
rs6811469	0.86[EUR][1000 genomes]
rs6814012	0.86[EUR][1000 genomes]
rs6814817	0.86[EUR][1000 genomes]
rs6816898	0.85[EUR][1000 genomes]
rs6819597	0.87[EUR][1000 genomes]
rs6825045	0.86[EUR][1000 genomes]
rs6826163	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6826398	0.84[EUR][1000 genomes]
rs6826406	0.85[EUR][1000 genomes]
rs6827128	0.86[EUR][1000 genomes]
rs6827767	0.90[EUR][1000 genomes]
rs6828596	0.87[EUR][1000 genomes]
rs6829896	0.90[EUR][1000 genomes]
rs6835736	0.88[EUR][1000 genomes]
rs6837830	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6844097	0.86[EUR][1000 genomes]
rs6845154	0.84[EUR][1000 genomes]
rs6845198	0.85[EUR][1000 genomes]
rs6845396	0.86[EUR][1000 genomes]
rs6848603	0.85[EUR][1000 genomes]
rs6848620	0.84[EUR][1000 genomes]
rs6850515	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6850760	0.86[EUR][1000 genomes]
rs6852075	0.86[EUR][1000 genomes]
rs6856681	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6856958	0.86[EUR][1000 genomes]
rs6857372	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7375677	0.86[EUR][1000 genomes]
rs7376624	0.91[EUR][1000 genomes]
rs7376943	0.83[EUR][1000 genomes]
rs7377856	0.84[EUR][1000 genomes]
rs7436646	0.86[EUR][1000 genomes]
rs7655350	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7664354	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7665152	0.88[EUR][1000 genomes]
rs7670789	0.85[EUR][1000 genomes]
rs7674409	0.88[EUR][1000 genomes]
rs7677924	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7683657	0.88[EUR][1000 genomes]
rs7684461	0.88[EUR][1000 genomes]
rs7684889	0.89[EUR][1000 genomes]
rs7688306	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7689664	0.89[EUR][1000 genomes]
rs7699624	0.88[EUR][1000 genomes]
rs8878	0.86[EUR][1000 genomes]
rs9884374	0.86[EUR][1000 genomes]
rs9990733	0.88[EUR][1000 genomes]
rs9992010	0.81[EUR][1000 genomes]
rs9999755	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs7676265	ART3	cis	Nerve Tibial	GTEx
rs7676265	NAAA	cis	Heart Left Ventricle	GTEx
rs7676265	ASAHL	Cis_1M	lymphoblastoid	RTeQTL
rs7676265	NAAA	cis	Skin Sun Exposed Lower leg	GTEx
rs7676265	CXCL10	Cis_1M	lymphoblastoid	RTeQTL
rs7676265	NAAA	cis	Artery Tibial	GTEx
rs7676265	NAAA	cis	Adipose Subcutaneous	GTEx
rs7676265	NAAA	cis	Whole Blood	GTEx
rs7676265	NAAA	cis	Esophagus Mucosa	GTEx
rs7676265	NAAA	cis	Muscle Skeletal	GTEx
rs7676265	NAAA	cis	Artery Aorta	GTEx
rs7676265	NAAA	cis	Esophagus Muscularis	GTEx
rs7676265	NAAA	cis	Nerve Tibial	GTEx
rs7676265	NAAA	cis	lung	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76995600-76999400	Active TSS	Psoas Muscle	Psoas
2	chr4:76995600-77000800	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr4:76995800-76998200	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr4:76995800-76999000	Active TSS	Right Ventricle	heart
5	chr4:76996400-76999000	Weak transcription	HSMMtube	muscle
6	chr4:76997000-76998200	Weak transcription	Left Ventricle	heart
7	chr4:76997000-76998400	Weak transcription	Fetal Heart	heart
8	chr4:76997000-77007200	Weak transcription	Fetal Brain Male	brain
9	chr4:76997000-77008000	Weak transcription	Brain Angular Gyrus	brain

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