Variant report

Variant	rs1555030
Chromosome Location	chr6:113797213-113797214
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10484458	0.92[ASN][1000 genomes]
rs11153422	0.89[ASN][1000 genomes]
rs12526316	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12527509	0.83[ASN][1000 genomes]
rs12528387	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1883170	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2092088	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2142638	0.92[ASN][1000 genomes]
rs2142640	0.92[ASN][1000 genomes]
rs2179114	0.92[ASN][1000 genomes]
rs2179115	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2179116	0.92[ASN][1000 genomes]
rs2179117	0.92[ASN][1000 genomes]
rs4945951	0.80[ASN][1000 genomes]
rs6903255	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6916484	0.89[ASN][1000 genomes]
rs6925126	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6936596	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs721464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7751070	0.89[ASN][1000 genomes]
rs7771683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320460	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9374402	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9374403	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9374405	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9384868	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9387146	0.92[ASN][1000 genomes]
rs9387148	0.84[ASN][1000 genomes]
rs9387149	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398345	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9398346	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9398347	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400626	0.92[ASN][1000 genomes]
rs9400628	0.83[ASN][1000 genomes]
rs9400629	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400630	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9488196	0.92[ASN][1000 genomes]
rs9488198	0.92[ASN][1000 genomes]
rs9488199	0.90[ASN][1000 genomes]
rs9488202	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9488205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113792000-113797600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:113792400-113797800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:113796400-113799200	Enhancers	Adipose Nuclei	Adipose
4	chr6:113796600-113798200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:113796800-113798800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:113797000-113798800	Enhancers	Osteobl	bone
7	chr6:113797200-113798800	Weak transcription	Pancreas	Pancrea

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