Variant report

Variant	rs9400630
Chromosome Location	chr6:113799956-113799957
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113799640..113802302-chr6:113802740..113805019,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10484458	0.81[ASN][1000 genomes]
rs12175106	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12526316	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12527509	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12528387	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1555030	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1883170	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2049924	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.82[ASN][1000 genomes]
rs2092088	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2142638	0.81[ASN][1000 genomes]
rs2142640	0.81[ASN][1000 genomes]
rs2179114	0.81[ASN][1000 genomes]
rs2179115	0.81[ASN][1000 genomes]
rs2179116	0.81[ASN][1000 genomes]
rs2179117	0.81[ASN][1000 genomes]
rs2348298	0.84[ASN][1000 genomes]
rs2348299	0.84[ASN][1000 genomes]
rs2348300	0.84[ASN][1000 genomes]
rs2348301	0.84[ASN][1000 genomes]
rs4945951	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6903255	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6925126	0.81[ASN][1000 genomes]
rs6928402	0.84[ASN][1000 genomes]
rs6936596	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs721464	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs724290	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7766686	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7771683	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs909542	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.84[ASN][1000 genomes]
rs9320451	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9320452	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9320460	0.81[ASN][1000 genomes]
rs9372363	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9372364	0.86[ASN][1000 genomes]
rs9374402	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9374403	0.81[ASN][1000 genomes]
rs9374405	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9384867	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9384868	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387146	0.81[ASN][1000 genomes]
rs9387147	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9387149	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9398344	0.82[AMR][1000 genomes]
rs9398345	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9398346	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9398347	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9400626	0.80[ASN][1000 genomes]
rs9400629	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9488196	0.81[ASN][1000 genomes]
rs9488198	0.81[ASN][1000 genomes]
rs9488202	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9488205	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113798600-113802400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:113798800-113801000	Weak transcription	Osteobl	bone
3	chr6:113799000-113801600	Weak transcription	NHDF-Ad	bronchial
4	chr6:113799200-113800800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:113799200-113800800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:113799600-113800600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:113799800-113801000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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