Variant report

Variant	rs9372364
Chromosome Location	chr6:113780566-113780567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10484458	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12175106	0.96[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs12526316	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12527509	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12528387	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1883170	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2049924	0.81[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs2142638	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2142640	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2179114	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2179115	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2179116	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2179117	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2348298	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2348299	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2348300	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2348301	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4945951	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5001721	0.81[ASN][1000 genomes]
rs6903255	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6925126	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6928402	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs724290	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs766330	0.81[ASN][1000 genomes]
rs7766686	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs909542	0.81[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs9320451	0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs9320452	0.96[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs9320460	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9372363	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374402	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374403	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9374405	0.85[ASN][1000 genomes]
rs9384867	0.82[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs9384868	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9387146	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9387147	0.85[ASN][1000 genomes]
rs9387149	0.85[ASN][1000 genomes]
rs9398344	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9398345	0.84[ASN][1000 genomes]
rs9398346	0.84[ASN][1000 genomes]
rs9398347	0.84[ASN][1000 genomes]
rs9400626	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9400630	0.86[ASN][1000 genomes]
rs9488196	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9488198	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9488199	0.83[ASN][1000 genomes]
rs9488202	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113771600-113782400	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113772400-113785800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:113777200-113785600	Weak transcription	A549	lung
4	chr6:113777800-113780600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:113778200-113782400	Weak transcription	NHEK	skin
6	chr6:113780000-113781800	Weak transcription	Placenta	Placenta
7	chr6:113780000-113781800	Weak transcription	NHDF-Ad	bronchial
8	chr6:113780000-113782000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:113780000-113782200	Weak transcription	Osteobl	bone
10	chr6:113780000-113782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:113780000-113785400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:113780000-113785400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:113780000-113785400	Weak transcription	NHLF	lung
14	chr6:113780200-113782400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:113780200-113782600	Weak transcription	Fetal Lung	lung
16	chr6:113780200-113785000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:113780200-113785400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:113780400-113785400	Weak transcription	HUVEC	blood vessel
19	chr6:113780400-113785600	Weak transcription	NH-A	brain
20	chr6:113780400-113785800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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