Variant report

Variant	rs9387147
Chromosome Location	chr6:113790485-113790486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HDAC2-13	chr6:113790426-113790565	NONHSAT114543

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10484458	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12175106	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12526316	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12527509	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12528387	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1883170	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2049924	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2142638	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2142640	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2179114	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2179115	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2179116	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2179117	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2348298	0.83[ASN][1000 genomes]
rs2348299	0.83[ASN][1000 genomes]
rs2348300	0.83[ASN][1000 genomes]
rs2348301	0.83[ASN][1000 genomes]
rs4945951	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58748285	0.86[AMR][1000 genomes]
rs6903255	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925126	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6928402	0.83[ASN][1000 genomes]
rs724290	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7766686	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs909542	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9320451	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9320452	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9320460	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9372363	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9372364	0.85[ASN][1000 genomes]
rs9374402	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9374403	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9374405	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9384867	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9384868	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9387146	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9387149	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9398344	0.94[AMR][1000 genomes]
rs9398345	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9398346	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9398347	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9400626	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9400630	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9488196	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9488198	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9488202	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113786600-113791800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:113787000-113791200	Weak transcription	Osteobl	bone
3	chr6:113787200-113791800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:113787400-113791600	Weak transcription	NHDF-Ad	bronchial

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