Variant report

Variant	rs58748285
Chromosome Location	chr6:113737472-113737473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10484458	0.81[EUR][1000 genomes]
rs12175106	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12526316	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12527509	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12528387	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1883170	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2049924	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2142638	0.81[EUR][1000 genomes]
rs2142640	0.81[EUR][1000 genomes]
rs2179114	0.81[EUR][1000 genomes]
rs2179115	0.81[EUR][1000 genomes]
rs2179116	0.81[EUR][1000 genomes]
rs2179117	0.81[EUR][1000 genomes]
rs2348298	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2348299	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2348300	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2348301	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4945951	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6903255	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6928402	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs724290	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7766686	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs909542	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9320451	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9320452	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9320460	0.80[EUR][1000 genomes]
rs9372363	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9374402	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9374403	0.81[EUR][1000 genomes]
rs9384867	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9384868	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9387146	0.81[EUR][1000 genomes]
rs9387147	0.86[AMR][1000 genomes]
rs9398344	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9400626	0.81[EUR][1000 genomes]
rs9488196	0.81[EUR][1000 genomes]
rs9488198	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113733400-113738400	Enhancers	NHDF-Ad	bronchial
2	chr6:113733800-113738200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:113733800-113738200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:113734200-113737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:113735400-113738000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:113735600-113738200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:113736000-113747200	Weak transcription	HMEC	breast
8	chr6:113736200-113738200	Weak transcription	NHEK	skin
9	chr6:113737200-113737600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:113737200-113737800	Weak transcription	HSMM	muscle
11	chr6:113737200-113738000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:113737200-113738200	Enhancers	Osteobl	bone

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