Variant report

Variant	rs2348299
Chromosome Location	chr6:113766086-113766087
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10484458	0.83[ASN][1000 genomes]
rs12175106	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12526316	0.91[ASN][1000 genomes]
rs12527509	0.93[ASN][1000 genomes]
rs12528387	0.93[ASN][1000 genomes]
rs1883170	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2049924	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2142638	0.83[ASN][1000 genomes]
rs2142640	0.83[ASN][1000 genomes]
rs2179114	0.83[ASN][1000 genomes]
rs2179115	0.83[ASN][1000 genomes]
rs2179116	0.83[ASN][1000 genomes]
rs2179117	0.83[ASN][1000 genomes]
rs2348298	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348300	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348301	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945951	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5001721	0.83[ASN][1000 genomes]
rs58748285	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6903255	0.93[ASN][1000 genomes]
rs6925126	0.83[ASN][1000 genomes]
rs6928402	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724290	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs766330	0.83[ASN][1000 genomes]
rs7766686	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs909542	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320451	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320452	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320460	0.83[ASN][1000 genomes]
rs9372363	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372364	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9374402	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9374403	0.83[ASN][1000 genomes]
rs9374405	0.83[ASN][1000 genomes]
rs9384867	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384868	0.92[ASN][1000 genomes]
rs9387146	0.83[ASN][1000 genomes]
rs9387147	0.83[ASN][1000 genomes]
rs9387149	0.83[ASN][1000 genomes]
rs9398344	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9398345	0.82[ASN][1000 genomes]
rs9398346	0.82[ASN][1000 genomes]
rs9398347	0.82[ASN][1000 genomes]
rs9400626	0.83[ASN][1000 genomes]
rs9400630	0.84[ASN][1000 genomes]
rs9488196	0.83[ASN][1000 genomes]
rs9488198	0.83[ASN][1000 genomes]
rs9488199	0.81[ASN][1000 genomes]
rs9488202	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113755800-113767800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:113763400-113769000	Weak transcription	Placenta	Placenta
3	chr6:113763800-113768400	Weak transcription	A549	lung
4	chr6:113766000-113767000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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