Variant report

Variant	rs1556802
Chromosome Location	chr11:32978170-32978171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10488704	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs10835981	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11032024	0.86[AFR][1000 genomes]
rs2024636	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4627042	0.85[EUR][1000 genomes]
rs7108128	1.00[YRI][hapmap]
rs926735	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv1040484	chr11:32951066-33093204	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1046198	chr11:32954100-33075142	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	esv3358675	chr11:32960425-32981454	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
10	esv1851630	chr11:32972567-32986329	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32950400-32994400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:32953800-32978400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:32954600-32990200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:32955400-32994200	Weak transcription	Gastric	stomach
5	chr11:32955400-32994400	Weak transcription	Esophagus	oesophagus
6	chr11:32955600-32987200	Weak transcription	Right Ventricle	heart
7	chr11:32955600-33000800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:32955600-33003800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:32956200-32979400	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:32956200-32994200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:32956800-32994200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:32957000-32978400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:32957000-32978400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:32957200-32978800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:32957200-32979200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:32957600-32978400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:32958000-32979600	Weak transcription	Fetal Kidney	kidney
18	chr11:32958600-32980600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:32958800-32978600	Weak transcription	NH-A	brain
20	chr11:32959600-32978400	Weak transcription	Brain Germinal Matrix	brain
21	chr11:32960200-32978400	Weak transcription	K562	blood
22	chr11:32960200-32979600	Weak transcription	Fetal Brain Female	brain
23	chr11:32962400-32994400	Weak transcription	Fetal Heart	heart
24	chr11:32968200-32978200	Weak transcription	Pancreas	Pancrea
25	chr11:32968200-32978200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:32968200-32978800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:32968200-32979600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:32968200-32979600	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:32968200-32980600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:32968200-32981400	Weak transcription	Fetal Stomach	stomach
31	chr11:32968200-32984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:32968200-32994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:32968200-32998800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:32968200-33002000	Weak transcription	Brain Substantia Nigra	brain
35	chr11:32968200-33003000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:32968800-33002000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:32969600-32997000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:32970000-32979400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:32970000-32979800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:32970200-32978200	Weak transcription	Ovary	ovary
41	chr11:32970200-32979400	Weak transcription	Placenta	Placenta
42	chr11:32970200-33001800	Weak transcription	Psoas Muscle	Psoas
43	chr11:32971600-32978400	Weak transcription	Brain Angular Gyrus	brain
44	chr11:32971800-32999600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:32973000-33003200	Weak transcription	NHLF	lung
46	chr11:32973200-32978200	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr11:32973200-33008600	Weak transcription	HSMMtube	muscle
48	chr11:32973400-32978400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:32973400-32979400	Weak transcription	Brain Anterior Caudate	brain
50	chr11:32973400-32979400	Weak transcription	Spleen	Spleen

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