Variant report

Variant	rs1559626
Chromosome Location	chr2:173725353-173725354
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173706643..173709122-chr2:173725202..173727159,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12693013	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2357950	0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2432927	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2468393	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2553000	0.80[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2553002	0.80[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2553003	0.80[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2676509	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2676513	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433381	1.00[AMR][1000 genomes]
rs6728322	1.00[AMR][1000 genomes]
rs6728688	1.00[AMR][1000 genomes]
rs7585729	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173721600-173726000	Weak transcription	Gastric	stomach
2	chr2:173722200-173727400	Enhancers	Fetal Heart	heart
3	chr2:173723400-173728800	Weak transcription	Pancreas	Pancrea
4	chr2:173724200-173725400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:173724200-173725600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:173724200-173727800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:173724400-173725600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr2:173724400-173725800	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr2:173724400-173725800	Active TSS	Right Atrium	heart
10	chr2:173724400-173725800	Flanking Active TSS	HUVEC	blood vessel
11	chr2:173724400-173727800	Enhancers	Fetal Stomach	stomach
12	chr2:173724600-173725400	Active TSS	Ovary	ovary
13	chr2:173724600-173726000	Active TSS	Brain Anterior Caudate	brain
14	chr2:173724600-173726000	Active TSS	Brain Substantia Nigra	brain
15	chr2:173724800-173725400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
16	chr2:173724800-173725800	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:173724800-173726600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr2:173724800-173727800	Enhancers	Fetal Lung	lung
19	chr2:173725000-173725400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:173725000-173725400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:173725000-173725800	Weak transcription	Left Ventricle	heart
22	chr2:173725000-173726000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:173725000-173726000	Weak transcription	Psoas Muscle	Psoas
24	chr2:173725000-173728000	Weak transcription	Fetal Intestine Small	intestine
25	chr2:173725200-173725400	Active TSS	Hela-S3	cervix
26	chr2:173725200-173725600	Weak transcription	Brain Germinal Matrix	brain
27	chr2:173725200-173725600	Weak transcription	Right Ventricle	heart
28	chr2:173725200-173725800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:173725200-173725800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:173725200-173725800	Enhancers	Brain Angular Gyrus	brain
31	chr2:173725200-173725800	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:173725200-173725800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:173725200-173726000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr2:173725200-173726200	Enhancers	NHEK	skin
35	chr2:173725200-173726400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:173725200-173727400	Weak transcription	Adipose Nuclei	Adipose
37	chr2:173725200-173728000	Weak transcription	Fetal Intestine Large	intestine

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