Variant report

Variant	rs2676509
Chromosome Location	chr2:173721251-173721252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12693013	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1559626	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2357950	0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2432927	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2468393	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2553000	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2553002	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2553003	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2676513	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433381	1.00[AMR][1000 genomes]
rs6728322	1.00[AMR][1000 genomes]
rs6728688	1.00[AMR][1000 genomes]
rs7585729	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173689200-173723200	Weak transcription	Esophagus	oesophagus
2	chr2:173714800-173722200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:173717600-173722400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:173719800-173724400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:173720000-173723000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:173720000-173723200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:173721200-173722000	Enhancers	Fetal Intestine Small	intestine
8	chr2:173721200-173722800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:173721200-173723000	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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