Variant report

Variant	rs1559745
Chromosome Location	chr8:6576414-6576415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:6574218..6576564-chr8:6656497..6658337,2	MCF-7	breast:
2	chr8:6573541..6575305-chr8:6575428..6577038,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10088817	0.81[YRI][hapmap]
rs10091758	0.81[YRI][hapmap]
rs10091854	0.81[YRI][hapmap]
rs10099645	0.81[YRI][hapmap]
rs10104430	0.81[YRI][hapmap]
rs10105115	0.81[YRI][hapmap]
rs10481363	0.81[YRI][hapmap]
rs10481382	0.81[YRI][hapmap]
rs10481383	0.81[YRI][hapmap]
rs10503369	0.81[YRI][hapmap]
rs13439495	0.81[YRI][hapmap]
rs1425783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1425786	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1469268	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1542849	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1559743	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17077451	1.00[MEX][hapmap]
rs17573820	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17637443	1.00[MEX][hapmap]
rs1834450	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2114060	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2162152	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2408445	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911973	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2911981	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911984	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2911988	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2912043	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2912073	1.00[CEU][hapmap]
rs2928616	1.00[CEU][hapmap]
rs2928620	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2928622	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs2928628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2980687	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2980691	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs714508	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1015981	chr8:6286575-6578450	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1021684	chr8:6350091-6809455	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	esv2422383	chr8:6362389-6781593	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv610004	chr8:6402366-6772913	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv1029241	chr8:6411300-6761720	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv933075	chr8:6456475-7366650	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
10	nsv1025976	chr8:6472948-6686972	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	nsv933768	chr8:6482944-6618221	Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv831220	chr8:6527845-6728491	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv1030637	chr8:6545498-6669949	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
14	nsv1034115	chr8:6546984-6665832	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
15	nsv465436	chr8:6568201-6921404	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv610006	chr8:6568201-6921404	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv1031063	chr8:6570354-6622685	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
18	nsv1027883	chr8:6570354-7250368	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
19	nsv1024685	chr8:6575334-6622685	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6567000-6578000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:6567000-6580200	Weak transcription	Right Ventricle	heart
3	chr8:6567400-6578000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:6567400-6586800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:6567400-6590000	Weak transcription	Left Ventricle	heart
6	chr8:6567400-6590200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:6567400-6590600	Weak transcription	Psoas Muscle	Psoas
8	chr8:6567400-6590800	Weak transcription	Pancreas	Pancrea
9	chr8:6567400-6592600	Weak transcription	Aorta	Aorta
10	chr8:6567600-6577400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:6567600-6585400	Weak transcription	Fetal Intestine Small	intestine
12	chr8:6567600-6586400	Weak transcription	Osteobl	bone
13	chr8:6567600-6589400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:6567800-6585400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:6567800-6585400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:6567800-6589200	Weak transcription	Brain Substantia Nigra	brain
17	chr8:6567800-6590000	Weak transcription	NHLF	lung
18	chr8:6568000-6577600	Weak transcription	NH-A	brain
19	chr8:6568000-6585400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:6568000-6586200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:6568000-6589400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr8:6568000-6603400	Weak transcription	Fetal Brain Male	brain
23	chr8:6568400-6577400	Weak transcription	HUVEC	blood vessel
24	chr8:6568400-6589800	Weak transcription	HSMMtube	muscle
25	chr8:6568400-6590400	Weak transcription	Brain Germinal Matrix	brain
26	chr8:6569400-6585400	Weak transcription	Esophagus	oesophagus
27	chr8:6569600-6578000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:6571400-6577400	Weak transcription	Placenta	Placenta
29	chr8:6571400-6587200	Weak transcription	Small Intestine	intestine
30	chr8:6572200-6578200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:6572400-6577800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:6572400-6590000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:6573200-6577200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr8:6573200-6577400	Strong transcription	Hela-S3	cervix
35	chr8:6573200-6577800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:6573200-6584000	Weak transcription	Stomach Mucosa	stomach
37	chr8:6573400-6577800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr8:6573800-6576800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
39	chr8:6574200-6577200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:6574200-6578200	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr8:6574400-6577200	Enhancers	Thymus	Thymus
42	chr8:6574400-6577600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr8:6574600-6577000	Strong transcription	K562	blood
44	chr8:6574600-6577400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr8:6574600-6578400	Strong transcription	HepG2	liver
46	chr8:6574800-6576800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr8:6574800-6577400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:6574800-6577600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr8:6574800-6577800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr8:6575000-6576600	Strong transcription	HMEC	breast

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