Variant report

Variant	rs2928622
Chromosome Location	chr8:6572281-6572282
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:6567796..6570649-chr8:6571999..6573620,2	MCF-7	breast:
2	chr8:6565441..6567730-chr8:6571539..6574058,3	MCF-7	breast:
3	chr8:6569990..6574079-chr8:6578560..6581728,3	MCF-7	breast:
4	chr8:6565268..6567791-chr8:6572000..6573647,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249898	Chromatin interaction
ENSG00000155189	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10088817	0.81[YRI][hapmap]
rs10091758	0.81[YRI][hapmap]
rs10091854	0.81[YRI][hapmap]
rs10099645	0.81[YRI][hapmap]
rs10104430	0.81[YRI][hapmap]
rs10105115	0.81[YRI][hapmap]
rs10454358	1.00[ASN][1000 genomes]
rs10481363	0.81[YRI][hapmap]
rs10481382	0.81[YRI][hapmap]
rs10481383	0.81[YRI][hapmap]
rs10503366	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[ASN][1000 genomes]
rs10503367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[ASN][1000 genomes]
rs10503369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs13439495	0.81[YRI][hapmap]
rs1425783	0.84[EUR][1000 genomes]
rs1425786	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1469269	0.97[ASN][1000 genomes]
rs1469270	0.95[ASN][1000 genomes]
rs1542849	1.00[CEU][hapmap]
rs1559743	0.84[EUR][1000 genomes]
rs1559745	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs17573820	0.84[EUR][1000 genomes]
rs1834450	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2114060	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2162152	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2408445	0.84[EUR][1000 genomes]
rs28373026	0.97[ASN][1000 genomes]
rs2911981	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs2911984	0.80[EUR][1000 genomes]
rs2911988	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2911989	0.91[ASN][1000 genomes]
rs2912043	0.84[EUR][1000 genomes]
rs2912073	1.00[CEU][hapmap]
rs2928616	1.00[CEU][hapmap]
rs2928620	0.84[EUR][1000 genomes]
rs2928628	0.80[EUR][1000 genomes]
rs2980687	1.00[CEU][hapmap];0.83[YRI][hapmap];0.80[EUR][1000 genomes]
rs2980691	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs3780084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3780085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs59366445	0.97[ASN][1000 genomes]
rs59623151	0.96[ASN][1000 genomes]
rs714508	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs968118	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1015981	chr8:6286575-6578450	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1021684	chr8:6350091-6809455	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	esv2422383	chr8:6362389-6781593	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv610004	chr8:6402366-6772913	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv1029241	chr8:6411300-6761720	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv933075	chr8:6456475-7366650	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
10	nsv1025976	chr8:6472948-6686972	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	nsv933768	chr8:6482944-6618221	Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv831220	chr8:6527845-6728491	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv1030637	chr8:6545498-6669949	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
14	nsv1034115	chr8:6546984-6665832	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
15	nsv465436	chr8:6568201-6921404	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv610006	chr8:6568201-6921404	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv1031063	chr8:6570354-6622685	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
18	nsv1027883	chr8:6570354-7250368	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6566800-6575800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:6566800-6575800	Weak transcription	Spleen	Spleen
3	chr8:6567000-6575600	Weak transcription	Gastric	stomach
4	chr8:6567000-6578000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:6567000-6580200	Weak transcription	Right Ventricle	heart
6	chr8:6567400-6575600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:6567400-6578000	Weak transcription	Brain Angular Gyrus	brain
8	chr8:6567400-6586800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:6567400-6590000	Weak transcription	Left Ventricle	heart
10	chr8:6567400-6590200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:6567400-6590600	Weak transcription	Psoas Muscle	Psoas
12	chr8:6567400-6590800	Weak transcription	Pancreas	Pancrea
13	chr8:6567400-6592600	Weak transcription	Aorta	Aorta
14	chr8:6567600-6572800	Weak transcription	Stomach Mucosa	stomach
15	chr8:6567600-6575600	Weak transcription	Fetal Stomach	stomach
16	chr8:6567600-6575600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr8:6567600-6577400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr8:6567600-6585400	Weak transcription	Fetal Intestine Small	intestine
19	chr8:6567600-6586400	Weak transcription	Osteobl	bone
20	chr8:6567600-6589400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:6567800-6575800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr8:6567800-6575800	Weak transcription	Fetal Intestine Large	intestine
23	chr8:6567800-6585400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:6567800-6585400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:6567800-6589200	Weak transcription	Brain Substantia Nigra	brain
26	chr8:6567800-6590000	Weak transcription	NHLF	lung
27	chr8:6568000-6572800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:6568000-6574800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr8:6568000-6574800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:6568000-6574800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr8:6568000-6575400	Weak transcription	Fetal Lung	lung
32	chr8:6568000-6575600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr8:6568000-6575600	Weak transcription	Fetal Heart	heart
34	chr8:6568000-6577600	Weak transcription	NH-A	brain
35	chr8:6568000-6585400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:6568000-6586200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr8:6568000-6589400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr8:6568000-6603400	Weak transcription	Fetal Brain Male	brain
39	chr8:6568200-6572600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr8:6568200-6573800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:6568200-6574200	Weak transcription	Primary T cells from cord blood	blood
42	chr8:6568200-6574400	Weak transcription	A549	lung
43	chr8:6568200-6574800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr8:6568200-6575000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr8:6568200-6575400	Weak transcription	NHEK	skin
46	chr8:6568200-6575800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr8:6568400-6575600	Weak transcription	Fetal Brain Female	brain
48	chr8:6568400-6575600	Weak transcription	HSMM	muscle
49	chr8:6568400-6577400	Weak transcription	HUVEC	blood vessel
50	chr8:6568400-6589800	Weak transcription	HSMMtube	muscle

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