Variant report

Variant	rs1559876
Chromosome Location	chr6:32215769-32215770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10807100	0.88[ASN][1000 genomes]
rs10947252	0.87[ASN][1000 genomes]
rs10947253	0.85[ASN][1000 genomes]
rs12194915	0.88[ASN][1000 genomes]
rs12528615	0.87[ASN][1000 genomes]
rs1474728	0.88[ASN][1000 genomes]
rs1474729	0.88[ASN][1000 genomes]
rs1555117	0.85[ASN][1000 genomes]
rs2022535	0.83[ASN][1000 genomes]
rs2022539	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2077333	0.82[ASN][1000 genomes]
rs2395110	0.80[EUR][1000 genomes]
rs2395111	0.80[EUR][1000 genomes]
rs2395112	0.82[EUR][1000 genomes]
rs2395114	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395115	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395143	0.82[ASN][1000 genomes]
rs2746115	0.87[ASN][1000 genomes]
rs2894239	0.83[EUR][1000 genomes]
rs2894240	0.83[EUR][1000 genomes]
rs3096701	0.82[EUR][1000 genomes]
rs3115570	0.81[EUR][1000 genomes]
rs3115573	0.83[EUR][1000 genomes]
rs3115575	0.82[EUR][1000 genomes]
rs3115576	0.83[EUR][1000 genomes]
rs3130310	0.83[EUR][1000 genomes]
rs3130311	0.83[EUR][1000 genomes]
rs3130312	0.83[EUR][1000 genomes]
rs3130313	0.83[EUR][1000 genomes]
rs3130315	0.83[EUR][1000 genomes]
rs3130317	0.83[EUR][1000 genomes]
rs3817982	0.87[ASN][1000 genomes]
rs397379	0.80[EUR][1000 genomes]
rs399897	0.80[EUR][1000 genomes]
rs400139	0.80[EUR][1000 genomes]
rs405875	0.80[EUR][1000 genomes]
rs410283	0.80[EUR][1000 genomes]
rs440169	0.82[EUR][1000 genomes]
rs4424116	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4713518	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs471964	0.87[ASN][1000 genomes]
rs476885	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs482194	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs485774	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs487649	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs495140	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4959091	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs501545	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs504203	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs504703	0.89[ASN][1000 genomes]
rs505274	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs508805	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs510181	0.85[ASN][1000 genomes]
rs518374	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs523627	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs524578	0.85[ASN][1000 genomes]
rs525607	0.86[ASN][1000 genomes]
rs531094	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs533876	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs533885	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs537757	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs539703	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs540639	0.86[ASN][1000 genomes]
rs542525	0.86[ASN][1000 genomes]
rs544100	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs546857	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs547077	0.86[ASN][1000 genomes]
rs547153	0.83[EUR][1000 genomes]
rs547261	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs552339	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs557539	0.86[ASN][1000 genomes]
rs560324	0.86[ASN][1000 genomes]
rs560505	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs563412	0.80[EUR][1000 genomes]
rs565571	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs567828	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs572730	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs574710	0.86[ASN][1000 genomes]
rs575765	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6457508	0.83[EUR][1000 genomes]
rs6457509	0.83[EUR][1000 genomes]
rs6457510	0.82[EUR][1000 genomes]
rs6457542	0.85[ASN][1000 genomes]
rs6457543	0.85[ASN][1000 genomes]
rs6457544	0.85[ASN][1000 genomes]
rs6913605	0.85[ASN][1000 genomes]
rs6929776	0.83[ASN][1000 genomes]
rs6930681	0.88[ASN][1000 genomes]
rs742582	0.88[ASN][1000 genomes]
rs761190	0.88[ASN][1000 genomes]
rs910052	0.88[ASN][1000 genomes]
rs926594	0.88[ASN][1000 genomes]
rs9267947	0.83[ASN][1000 genomes]
rs9267956	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9267958	0.83[EUR][1000 genomes]
rs9267970	0.83[EUR][1000 genomes]
rs9267971	0.83[EUR][1000 genomes]
rs9267996	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9268000	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9268035	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9268045	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9268082	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9268086	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9268141	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9268257	0.85[ASN][1000 genomes]
rs9268258	0.85[ASN][1000 genomes]
rs9268259	0.85[ASN][1000 genomes]
rs9268260	0.85[ASN][1000 genomes]
rs9268261	0.85[ASN][1000 genomes]
rs9296021	0.88[ASN][1000 genomes]
rs9296022	0.88[ASN][1000 genomes]
rs9296023	0.81[ASN][1000 genomes]
rs9348880	0.83[ASN][1000 genomes]
rs9348882	0.88[ASN][1000 genomes]
rs9357140	0.88[ASN][1000 genomes]
rs9366793	0.83[ASN][1000 genomes]
rs9366794	0.88[ASN][1000 genomes]
rs9368711	0.87[ASN][1000 genomes]
rs9368712	0.85[ASN][1000 genomes]
rs9368713	0.85[ASN][1000 genomes]
rs9368715	0.88[ASN][1000 genomes]
rs9378257	0.87[ASN][1000 genomes]
rs9378258	0.86[ASN][1000 genomes]
rs9380289	0.88[ASN][1000 genomes]
rs9380290	0.83[ASN][1000 genomes]
rs9391777	0.88[ASN][1000 genomes]
rs9394086	0.87[ASN][1000 genomes]
rs9394087	0.83[ASN][1000 genomes]
rs9405090	0.88[ASN][1000 genomes]
rs9405092	0.87[ASN][1000 genomes]
rs9405093	0.85[ASN][1000 genomes]
rs973036	0.83[ASN][1000 genomes]
rs973037	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
8	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
9	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
10	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
11	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
12	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
13	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
17	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
19	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
20	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
21	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
22	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
23	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
24	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
26	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
27	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
28	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
29	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
30	nsv1028682	chr6:32194392-32233814	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32213200-32222400	Weak transcription	Thymus	Thymus
2	chr6:32213200-32222600	Weak transcription	Fetal Thymus	thymus
3	chr6:32213400-32217000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:32213600-32215800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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