Variant report

Variant	rs1559964
Chromosome Location	chr2:145343426-145343427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:145342248..145344380-chr2:146310984..146313309,2	K562	blood:
2	chr2:145338348..145347477-chr2:145350435..145356314,14	K562	blood:
3	chr2:145341981..145344209-chr2:145363216..145365343,2	K562	blood:
4	chr2:145255733..145257269-chr2:145342387..145344635,2	K562	blood:
5	chr2:145089150..145090719-chr2:145340805..145343692,2	K562	blood:
6	chr2:145264650..145290093-chr2:145328018..145347614,89	K562	blood:
7	chr2:145260780..145283431-chr2:145335698..145347428,65	K562	blood:

No data

Variant related genes	Relation type
ENSG00000121964	Chromatin interaction
ENSG00000238057	Chromatin interaction
ENSG00000169554	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10187896	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10201960	0.82[ASN][1000 genomes]
rs10496964	0.84[ASN][1000 genomes]
rs10496965	0.81[ASN][1000 genomes]
rs10803510	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12691695	0.82[ASN][1000 genomes]
rs1346343	0.82[ASN][1000 genomes]
rs1346344	0.83[ASN][1000 genomes]
rs1427499	0.81[ASN][1000 genomes]
rs1427506	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1427507	0.82[ASN][1000 genomes]
rs1427508	0.82[ASN][1000 genomes]
rs16823886	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17690892	0.84[ASN][1000 genomes]
rs17741930	0.84[ASN][1000 genomes]
rs2162571	0.82[ASN][1000 genomes]
rs4662385	0.82[ASN][1000 genomes]
rs4662386	0.82[ASN][1000 genomes]
rs4662388	0.82[ASN][1000 genomes]
rs6727224	0.82[ASN][1000 genomes]
rs7565134	0.80[ASN][1000 genomes]
rs767381	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv916172	chr2:144970681-145425713	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv948474	chr2:145035890-145436665	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv531662	chr2:145219415-145422833	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145339600-145349400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:145340000-145352000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:145341200-145348600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:145341200-145352800	Weak transcription	Right Atrium	heart
5	chr2:145341400-145343800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:145341400-145344000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr2:145341400-145345200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:145341600-145345200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:145341800-145344000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:145341800-145350200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr2:145343000-145343800	Weak transcription	Primary hematopoietic stem cells	blood

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