Variant report

Variant	rs767381
Chromosome Location	chr2:145382208-145382209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:145359427..145362425-chr2:145380833..145383336,2	K562	blood:
2	chr2:145276054..145279282-chr2:145381617..145385585,5	K562	blood:
3	chr2:145317062..145319936-chr2:145379718..145382674,2	K562	blood:
4	chr2:145380755..145383248-chr2:145389052..145391093,3	K562	blood:
5	chr2:145365652..145369289-chr2:145381378..145385045,3	K562	blood:

Variant related genes	Relation type
ENSG00000238057	Chromatin interaction
ENSG00000169554	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10187896	0.91[ASN][1000 genomes]
rs10201960	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1035837	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10496964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10496965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10803510	0.95[ASN][1000 genomes]
rs12691695	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12691696	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13020210	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1346343	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1346344	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1427499	0.99[ASN][1000 genomes]
rs1427500	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1427506	0.92[ASN][1000 genomes]
rs1427507	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1427508	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1559964	0.82[ASN][1000 genomes]
rs16823886	0.92[ASN][1000 genomes]
rs17690892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17741930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1834787	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2162571	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2381649	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4143011	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4662385	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4662386	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4662388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727224	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6731249	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7565134	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv916172	chr2:144970681-145425713	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv948474	chr2:145035890-145436665	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv531662	chr2:145219415-145422833	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145379200-145383200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:145382000-145382400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:145382000-145383600	Enhancers	NHEK	skin
4	chr2:145382200-145383600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links