Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10476546	0.82[CEU][hapmap]
rs11135450	0.83[CEU][hapmap]
rs11743265	0.82[CEU][hapmap]
rs11948416	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs155439	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs155971	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs155994	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs155995	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs156019	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs156022	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271919	0.91[EUR][1000 genomes]
rs271921	0.92[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs271923	0.91[CEU][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes]
rs271927	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs271939	0.82[EUR][1000 genomes]
rs2936428	0.82[EUR][1000 genomes]
rs3811942	0.82[CEU][hapmap]
rs436321	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs456709	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs458450	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95744000-95746600	Enhancers	Osteobl	bone
2	chr5:95744200-95746600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:95744200-95746600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:95744200-95761400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:95744400-95746200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:95744600-95747400	Weak transcription	HSMM	muscle
7	chr5:95745000-95746000	Weak transcription	NH-A	brain
8	chr5:95745200-95746600	Enhancers	Hela-S3	cervix
9	chr5:95745400-95746200	Enhancers	Brain Angular Gyrus	brain
10	chr5:95745400-95746800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:95745400-95748600	Weak transcription	HUVEC	blood vessel
12	chr5:95745600-95746200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr5:95745800-95746000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:95745800-95746200	Enhancers	Brain Anterior Caudate	brain
15	chr5:95745800-95746400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:95745800-95746400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:95745800-95746800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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