Variant report

Variant	rs271923
Chromosome Location	chr5:95737362-95737363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95737143..95738961-chr5:95742583..95744709,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10476546	0.82[CEU][hapmap];0.80[GIH][hapmap];0.81[MEX][hapmap]
rs11135450	0.82[CEU][hapmap]
rs11135457	0.91[CEU][hapmap]
rs11741888	0.91[CEU][hapmap]
rs11743265	0.91[CEU][hapmap]
rs11948416	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1353797	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs155439	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs155971	0.91[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs155994	0.91[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs155995	0.90[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs156019	0.91[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs156021	0.91[CEU][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes]
rs156022	0.88[EUR][1000 genomes]
rs1874929	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271919	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271927	0.95[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs271937	0.93[ASN][1000 genomes]
rs271939	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271947	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2936428	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3792744	0.91[CEU][hapmap]
rs3811942	0.91[CEU][hapmap]
rs436321	0.91[CEU][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs456709	0.91[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs458450	0.85[EUR][1000 genomes]
rs4869284	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs271923	TTC37	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95720800-95745400	Weak transcription	Brain Angular Gyrus	brain
2	chr5:95721000-95738400	Weak transcription	Hela-S3	cervix
3	chr5:95728400-95737800	Weak transcription	HUVEC	blood vessel
4	chr5:95733000-95745800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:95735400-95743200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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