Variant report

Variant	rs1353797
Chromosome Location	chr5:95689823-95689824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037912	0.86[EUR][1000 genomes]
rs10476546	0.86[CEU][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs10476664	0.81[EUR][1000 genomes]
rs11135450	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs11135457	0.86[CEU][hapmap]
rs11741888	0.86[CEU][hapmap]
rs11743265	0.86[CEU][hapmap]
rs155971	0.87[CEU][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap]
rs155994	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs155995	0.86[CEU][hapmap];0.80[JPT][hapmap]
rs156019	0.87[CEU][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap]
rs156021	0.86[CEU][hapmap]
rs1874929	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs271919	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs271921	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs271923	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs271927	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs271937	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs271939	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs271947	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2936428	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3792744	0.86[CEU][hapmap]
rs3811942	0.86[CEU][hapmap]
rs3922468	0.89[EUR][1000 genomes]
rs436321	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs456709	0.87[CEU][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap]
rs4869284	0.91[CEU][hapmap]
rs6875585	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1353797	TTC37	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95686600-95691600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links