Variant report

Variant	rs6875585
Chromosome Location	chr5:95593462-95593463
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10037912	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10476546	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10476664	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10866767	0.86[CEU][hapmap]
rs11135450	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11948972	0.85[CEU][hapmap]
rs12517140	0.80[AMR][1000 genomes]
rs1353797	0.86[EUR][1000 genomes]
rs155971	0.82[CEU][hapmap]
rs155994	0.83[CEU][hapmap]
rs155995	0.86[CEU][hapmap]
rs156019	0.82[CEU][hapmap]
rs156021	0.82[CEU][hapmap]
rs1874929	0.86[EUR][1000 genomes]
rs271921	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs271923	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs271939	0.82[EUR][1000 genomes]
rs271947	0.82[EUR][1000 genomes]
rs2936428	0.82[EUR][1000 genomes]
rs3922468	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs436321	0.82[CEU][hapmap]
rs4379224	0.91[YRI][hapmap]
rs4529218	0.90[CEU][hapmap]
rs456709	0.82[CEU][hapmap]
rs4637573	0.86[CEU][hapmap]
rs62366027	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95583200-95595200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:95583800-95595000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:95583800-95595000	Weak transcription	Psoas Muscle	Psoas
4	chr5:95585000-95594600	Weak transcription	HepG2	liver
5	chr5:95586200-95595000	Weak transcription	Pancreas	Pancrea
6	chr5:95587800-95595400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:95588200-95596600	Enhancers	HUVEC	blood vessel
8	chr5:95588400-95596000	Enhancers	Osteobl	bone
9	chr5:95589800-95596800	Enhancers	HSMM	muscle
10	chr5:95590000-95595600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:95591200-95595200	Weak transcription	Aorta	Aorta
12	chr5:95591200-95595800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:95591400-95595000	Weak transcription	Stomach Mucosa	stomach
14	chr5:95591400-95596600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:95591600-95593800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr5:95591800-95593800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:95591800-95594800	Weak transcription	Adipose Nuclei	Adipose
18	chr5:95591800-95594800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr5:95591800-95594800	Enhancers	A549	lung
20	chr5:95591800-95595200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr5:95591800-95595600	Enhancers	NHDF-Ad	bronchial
22	chr5:95592400-95595600	Enhancers	NHEK	skin
23	chr5:95592400-95596000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:95592400-95596000	Enhancers	NH-A	brain
25	chr5:95592400-95596200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:95592400-95596200	Enhancers	HMEC	breast
27	chr5:95592400-95596400	Enhancers	Hela-S3	cervix
28	chr5:95592400-95596600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:95592600-95595400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:95593000-95594200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr5:95593200-95593600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr5:95593200-95593600	Weak transcription	NHLF	lung
33	chr5:95593200-95594000	Enhancers	HSMMtube	muscle
34	chr5:95593200-95596200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:95593400-95596600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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